miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
12084824 NC_002641.1 Meleagrid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9913 + 153232 90 19 -25.2 5' arm      3' arm
9948 - 118556 89 19 -19.7 NP_073290 5' arm      3' arm
9934 - 39589 87 19 -19.9 NP_073312 5' arm      3' arm
9956 - 129364 90 19 -25.2 5' arm      3' arm
9935 - 49096 89 19 -21.9 NP_073318 5' arm      3' arm
9869 + 5131 89 19 -19.7 NP_073290 5' arm      3' arm
9940 - 77776 73 19 -24.83 NP_073330 5' arm      3' arm
9953 - 125235 89 19.5 -27 NP_073383 5' arm      3' arm
9955 - 128212 90 19.5 -19.4 NP_073366 5' arm      3' arm
9917 + 157361 89 19.5 -27 NP_073365 5' arm      3' arm
9915 + 154384 90 19.5 -19.4 NP_073381 5' arm      3' arm
9936 - 56177 89 19.5 -27.3 NP_073322 5' arm      3' arm
9943 - 102011 90 19.5 -20.7 NP_073343 5' arm      3' arm
9909 + 148076 90 20 -24.8 5' arm      3' arm
9906 + 135624 90 20 -22.7 5' arm      3' arm
9899 + 129163 83 20 -22 NP_073381 5' arm      3' arm
9876 + 60484 90 20 -20.6 NP_073323 5' arm      3' arm
9942 - 99202 88 20 -36.3 NP_073341 5' arm      3' arm
9963 - 146972 90 20 -22.7 5' arm      3' arm
9960 - 134520 90 20 -24.8 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.