miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
27754751 NC_004162.2 Chikungunya virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16710 - 7749 90 22.5 -19.9 NP_690589 5' arm      3' arm
16709 - 7118 90 22.5 -27.9 NP_690588 5' arm      3' arm
16711 - 8995 90 19 -20.5 NP_690589 5' arm      3' arm
16708 - 5214 89 23 -22.6 NP_690588 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.