miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20070095 NC_003501.1 Brome streak mosaic virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13901 + 9275 90 21 -21.3 NP_612585 5' arm      3' arm
13902 + 9375 90 19.5 -20.3 NP_612585 5' arm      3' arm
13903 + 9579 87 20 -20.2 5' arm      3' arm
13906 - 9284 89 20 -24.8 NP_612585 5' arm      3' arm
13904 - 569 90 21.5 -23 NP_612585 5' arm      3' arm
13905 - 843 90 19.5 -19.9 NP_612585 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.