miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629518 NC_001822.1 Leek white stripe virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6089 - 3339 88 20 -23.6 NP_044744 5' arm      3' arm
6088 - 744 90 20 -29.1 NP_044740 5' arm      3' arm
6087 + 2124 89 27.5 -31.4 NP_044740 5' arm      3' arm
6086 + 1891 89 20 -19.8 NP_044740 5' arm      3' arm
6085 + 1727 90 19.5 -20.2 NP_044740 5' arm      3' arm
6084 + 1290 89 22.5 -26.3 NP_044740 5' arm      3' arm
6083 + 656 90 23 -30.4 NP_044740 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.