miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
15617474 NC_003102.1 Spodoptera litura nucleopolyhedrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
11650 + 3434 90 24.5 -30.8 5' arm      3' arm
11699 - 89603 87 26 -23.2 5' arm      3' arm
11682 + 132432 89 27 -28.1 5' arm      3' arm
11701 - 103654 90 28.5 -24.9 5' arm      3' arm
11673 + 89517 87 25.5 -20 5' arm      3' arm
11692 - 42747 90 33 -25.1 5' arm      3' arm
11684 - 3522 89 25 -25.8 5' arm      3' arm
11672 + 76509 90 23.5 -31.5 5' arm      3' arm
11654 + 25814 87 25 -33.5 5' arm      3' arm
11656 + 26329 86 19 -22.3 5' arm      3' arm
11655 + 25923 90 25 -24.2 5' arm      3' arm
11651 + 10563 85 21 -26.5 5' arm      3' arm
11686 - 15816 86 21.5 -21.3 NP_258284 5' arm      3' arm
11685 - 15060 89 23 -22 NP_258284 5' arm      3' arm
11687 - 16829 87 20.5 -28.9 NP_258285 5' arm      3' arm
11652 + 17296 86 20.5 -25.51 NP_258285 5' arm      3' arm
11653 + 19933 84 19 -21.6 NP_258289 5' arm      3' arm
11688 - 23238 88 22.5 -24.3 NP_258291 5' arm      3' arm
11657 + 26559 89 20.5 -28.8 NP_258293 5' arm      3' arm
11689 - 29566 89 20.5 -20.7 NP_258297 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.