miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
4267	+	5087	89	22	-36	NP_043570		5' arm      3' arm
4276	+	8122	90	22.5	-36	NP_043570		5' arm      3' arm
4273	+	7403	90	23.5	-35.5	NP_043570		5' arm      3' arm
4265	+	4621	87	24	-34.8	NP_043570		5' arm      3' arm
4277	+	8322	90	21	-33.7	NP_043570		5' arm      3' arm
4264	+	4138	90	20	-32.2	NP_043570		5' arm      3' arm
4278	+	8579	88	26	-32.1	NP_043570		5' arm      3' arm
4270	+	6064	89	19.5	-31.1	NP_043570		5' arm      3' arm
4268	+	5233	89	20	-31	NP_043570		5' arm      3' arm
4254	+	794	90	23	-30.8	NP_043570		5' arm      3' arm
4271	+	6429	84	21	-30.2	NP_043570		5' arm      3' arm
4256	+	1635	82	23.5	-29.8	NP_043570		5' arm      3' arm
4275	+	7842	90	20	-28.6	NP_043570		5' arm      3' arm
4274	+	7686	82	20	-28.4	NP_043570		5' arm      3' arm
4280	+	9004	87	22	-28	NP_043570		5' arm      3' arm
4279	+	8815	88	22	-27	NP_043570		5' arm      3' arm
4258	+	2515	89	25	-26.5	NP_043570		5' arm      3' arm
4260	+	3104	89	26.5	-26.3	NP_043570		5' arm      3' arm
4266	+	4800	80	19.5	-26	NP_043570		5' arm      3' arm
4262	+	3322	88	21.5	-25.5	NP_043570		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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