miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20178606 NC_003676.1 Apoi virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14938 + 3988 85 21 -27.5 NP_620045 5' arm      3' arm
14940 + 7319 85 23 -27.1 NP_620045 5' arm      3' arm
14939 + 6972 89 20 -23.2 NP_620045 5' arm      3' arm
14941 + 9562 87 21.5 -19.5 NP_620045 5' arm      3' arm
14942 - 9316 89 21 -21.6 NP_620045 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.