miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20260786 NC_003688.1 Cucurbit aphid-borne yellows virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14972 + 922 84 21.5 -25.8 NP_620102 5' arm      3' arm
14973 + 1333 88 19.5 -21.1 NP_620102 5' arm      3' arm
14974 + 2161 86 19 -20.5 NP_620101 5' arm      3' arm
14975 + 2534 89 20 -19.9 NP_620101 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.