Results 1 - 9 of 9 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| MIMAT0000996 | ebv-miR-BHRF1-2* | -41.1 | NC_007605.1 | + | 42843 | 0.67 | 1 |
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Target: 5'- uGUUAUCUuuUGCGGCAGAAa-- -3' miRNA: 3'- -CGAUAGAcgACGUUGUCUUaaa -5' |
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| MIMAT0000996 | ebv-miR-BHRF1-2* | -41.1 | NC_007605.1 | + | 50305 | 0.66 | 1 |
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Target: 5'- uGCUGUCUGCUcCuGACAGGGa-- -3' miRNA: 3'- -CGAUAGACGAcG-UUGUCUUaaa -5' |
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| MIMAT0000996 | ebv-miR-BHRF1-2* | -41.1 | NC_007605.1 | - | 111144 | 0.68 | 0.999999 |
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Target: 5'- -gUAUCUGCUGgGGCGGGGg-- -3' miRNA: 3'- cgAUAGACGACgUUGUCUUaaa -5' |
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| MIMAT0000996 | ebv-miR-BHRF1-2* | -41.1 | NC_007605.1 | + | 57593 | 0.69 | 0.999997 |
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Target: 5'- gGCUG-CUGCUGCAGuCGGGGa-- -3' miRNA: 3'- -CGAUaGACGACGUU-GUCUUaaa -5' |
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| MIMAT0000996 | ebv-miR-BHRF1-2* | -41.1 | NC_007605.1 | + | 126033 | 0.69 | 0.999996 |
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Target: 5'- aGCUGUCUccGCUGCGGucCAGAAg-- -3' miRNA: 3'- -CGAUAGA--CGACGUU--GUCUUaaa -5' |
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| MIMAT0000996 | ebv-miR-BHRF1-2* | -41.1 | NC_007605.1 | - | 128821 | 0.69 | 0.999996 |
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Target: 5'- aCUAUCUGCUGCugaccaccAACGGGAc-- -3' miRNA: 3'- cGAUAGACGACG--------UUGUCUUaaa -5' |
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| MIMAT0000996 | ebv-miR-BHRF1-2* | -41.1 | NC_007605.1 | + | 42814 | 0.69 | 0.999993 |
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Target: 5'- ---uUCUGUUGCAGCAGAu--- -3' miRNA: 3'- cgauAGACGACGUUGUCUuaaa -5' |
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| MIMAT0000996 | ebv-miR-BHRF1-2* | -41.1 | NC_007605.1 | + | 68256 | 0.7 | 0.99996 |
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Target: 5'- cGUUGUCUGCUcgguaGCAGCGGAc--- -3' miRNA: 3'- -CGAUAGACGA-----CGUUGUCUuaaa -5' |
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| MIMAT0000996 | ebv-miR-BHRF1-2* | -41.1 | NC_007605.1 | - | 43004 | 1.02 | 0.135034 |
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Target: 5'- aGCUAUCUGCUGCAACAGAAUUUa -3' miRNA: 3'- -CGAUAGACGACGUUGUCUUAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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