Results 1 - 8 of 8 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0000997 | ebv-miR-BHRF1-2 | -40.1 | NC_007605.1 | + | 42807 | 0.66 | 1 |
Target: 5'- uUUUAAaUUCUGuuGCAGcAGAUAg -3' miRNA: 3'- -AAGUUaAAGACggCGUUuUCUAU- -5' |
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MIMAT0000997 | ebv-miR-BHRF1-2 | -40.1 | NC_007605.1 | + | 91664 | 0.67 | 1 |
Target: 5'- gUUCAggUUCcGCCGCGuuGGAa- -3' miRNA: 3'- -AAGUuaAAGaCGGCGUuuUCUau -5' |
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MIMAT0000997 | ebv-miR-BHRF1-2 | -40.1 | NC_007605.1 | + | 97413 | 0.71 | 0.999995 |
Target: 5'- -------gCUGCCGCGGAGGGUGa -3' miRNA: 3'- aaguuaaaGACGGCGUUUUCUAU- -5' |
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MIMAT0000997 | ebv-miR-BHRF1-2 | -40.1 | NC_007605.1 | + | 125510 | 0.67 | 1 |
Target: 5'- cUUCGAgcagUUCUGCCGCGu--GGUc -3' miRNA: 3'- -AAGUUa---AAGACGGCGUuuuCUAu -5' |
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MIMAT0000997 | ebv-miR-BHRF1-2 | -40.1 | NC_007605.1 | + | 145891 | 0.67 | 1 |
Target: 5'- gUCGA---CUGCUGCGAAAGGUu -3' miRNA: 3'- aAGUUaaaGACGGCGUUUUCUAu -5' |
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MIMAT0000997 | ebv-miR-BHRF1-2 | -40.1 | NC_007605.1 | + | 163973 | 0.7 | 0.999999 |
Target: 5'- -aCGGUga-UGCCGCAAAGGAg- -3' miRNA: 3'- aaGUUAaagACGGCGUUUUCUau -5' |
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MIMAT0000997 | ebv-miR-BHRF1-2 | -40.1 | NC_007605.1 | - | 43007 | 0.66 | 1 |
Target: 5'- aUCAGcuaUCUGCUGCAAcAGAa- -3' miRNA: 3'- aAGUUaa-AGACGGCGUUuUCUau -5' |
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MIMAT0000997 | ebv-miR-BHRF1-2 | -40.1 | NC_007605.1 | - | 43040 | 1.02 | 0.189178 |
Target: 5'- uUUCAAUUUCUGCCGCAAAAGAUAa -3' miRNA: 3'- -AAGUUAAAGACGGCGUUUUCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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