miRNA display CGI


Results 1 - 20 of 45 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 152788 1.02 0.094377
Target:  5'- cGCAAGGGCGAAUGCAGAAAAUAg -3'
miRNA:   3'- -CGUUCCCGCUUACGUCUUUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 61445 0.74 0.990849
Target:  5'- gGCGGGGGCGGcgGCGGGc---- -3'
miRNA:   3'- -CGUUCCCGCUuaCGUCUuuuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 148971 0.74 0.99216
Target:  5'- cGCAGGGGCgccgaaagcagGAAUGCGGGGAGc- -3'
miRNA:   3'- -CGUUCCCG-----------CUUACGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 72288 0.74 0.99216
Target:  5'- aGCGAGGGCcaGAUGCAGGAGc-- -3'
miRNA:   3'- -CGUUCCCGc-UUACGUCUUUuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 62319 0.72 0.99772
Target:  5'- aGUggGGGCGGGgccgGCGGggGAg- -3'
miRNA:   3'- -CGuuCCCGCUUa---CGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 36631 0.72 0.998134
Target:  5'- gGCGGGGGUG-GUGguGAAGGUGg -3'
miRNA:   3'- -CGUUCCCGCuUACguCUUUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 156190 0.72 0.998483
Target:  5'- cGCAGGGGUGGuggauGUGCGGggGc-- -3'
miRNA:   3'- -CGUUCCCGCU-----UACGUCuuUuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 50559 0.71 0.999018
Target:  5'- --cAGGGCGggUGCcuGGggGAUGg -3'
miRNA:   3'- cguUCCCGCuuACG--UCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 152628 0.71 0.999382
Target:  5'- uGCAAGGaGCGAuuUGgAGAAAAUAa -3'
miRNA:   3'- -CGUUCC-CGCUu-ACgUCUUUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 54679 0.71 0.999382
Target:  5'- -gGAGGGCGAGgaGCGGAGGAa- -3'
miRNA:   3'- cgUUCCCGCUUa-CGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 61601 0.71 0.999382
Target:  5'- uGUggGGGCGGcgGCGGAc---- -3'
miRNA:   3'- -CGuuCCCGCUuaCGUCUuuuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 64699 0.71 0.999516
Target:  5'- aGCcGGGGUGggUGUAGggGu-- -3'
miRNA:   3'- -CGuUCCCGCuuACGUCuuUuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 108039 0.71 0.999516
Target:  5'- aUAGGGGCGAagGguGggGGUGg -3'
miRNA:   3'- cGUUCCCGCUuaCguCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 167261 0.7 0.999624
Target:  5'- cGCAGGGGCGuuggugGCGGAGu--- -3'
miRNA:   3'- -CGUUCCCGCuua---CGUCUUuuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 100937 0.7 0.999778
Target:  5'- gGCAGGGGCGugccgcGCGGGGAAc- -3'
miRNA:   3'- -CGUUCCCGCuua---CGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 36554 0.69 0.999874
Target:  5'- uGguGGGGgGggUGguGGGAGUGg -3'
miRNA:   3'- -CguUCCCgCuuACguCUUUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 170776 0.69 0.999874
Target:  5'- gGUggGGGCGGGaGCGGggGGc- -3'
miRNA:   3'- -CGuuCCCGCUUaCGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 169716 0.69 0.999874
Target:  5'- gGUggGGGCGGGaGCGGggGGc- -3'
miRNA:   3'- -CGuuCCCGCUUaCGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 171314 0.69 0.999874
Target:  5'- gGUggGGGCGGGaGCGGggGGc- -3'
miRNA:   3'- -CGuuCCCGCUUaCGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 170254 0.69 0.999874
Target:  5'- gGUggGGGCGGGaGCGGggGGc- -3'
miRNA:   3'- -CGuuCCCGCUUaCGUCuuUUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.