miRNA display CGI


Results 1 - 20 of 46 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 70328 0.66 0.896692
Target:  5'- uGGGAGGGgugaguucgacgguaGGGGAGGcGGGaUCUGu -3'
miRNA:   3'- uUUCUCCC---------------CCUCUCC-CCC-AGAC- -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 118582 0.66 0.893832
Target:  5'- uGGGGucGGGGGAGuGGGGG-Cg- -3'
miRNA:   3'- -UUUCu-CCCCCUCuCCCCCaGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 + 118531 0.66 0.893832
Target:  5'- cGGAGGGGcGGGGGuccggggggcGGGGGuGUCUa -3'
miRNA:   3'- -UUUCUCC-CCCUC----------UCCCC-CAGAc -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 + 118821 0.67 0.854553
Target:  5'- cGGGGAGGGGGGccgggcGGGGGGagUGc -3'
miRNA:   3'- -UUUCUCCCCCUc-----UCCCCCagAC- -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 + 72594 0.68 0.837124
Target:  5'- uAGGGAGGGGc---GGGGGUUUGg -3'
miRNA:   3'- -UUUCUCCCCcucuCCCCCAGAC- -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27637 0.69 0.759422
Target:  5'- -cGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uuUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27757 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27438 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27797 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27717 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27877 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27917 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27957 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27837 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27677 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27598 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27558 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27518 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27478 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 28090 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.