miRNA display CGI


Results 1 - 20 of 46 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 119445 0.7 0.695244
Target:  5'- uGAGAGccaggcgaGGGGAGAGGGGGa--- -3'
miRNA:   3'- uUUCUC--------CCCCUCUCCCCCagac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 + 118821 0.67 0.854553
Target:  5'- cGGGGAGGGGGGccgggcGGGGGGagUGc -3'
miRNA:   3'- -UUUCUCCCCCUc-----UCCCCCagAC- -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 118582 0.66 0.893832
Target:  5'- uGGGGucGGGGGAGuGGGGG-Cg- -3'
miRNA:   3'- -UUUCu-CCCCCUCuCCCCCaGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 + 118531 0.66 0.893832
Target:  5'- cGGAGGGGcGGGGGuccggggggcGGGGGuGUCUa -3'
miRNA:   3'- -UUUCUCC-CCCUC----------UCCCC-CAGAc -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 118437 0.75 0.447111
Target:  5'- gGAAGGGaGGGGGGAGGGGaGgcaCUGg -3'
miRNA:   3'- -UUUCUC-CCCCUCUCCCC-Ca--GAC- -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 + 118252 0.73 0.508615
Target:  5'- -uGGAGGGGGcuGGAGGGGGg--- -3'
miRNA:   3'- uuUCUCCCCC--UCUCCCCCagac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 118233 0.76 0.354621
Target:  5'- uGAGAGccaggcgaGGGGAGAGGGGG-CUGa -3'
miRNA:   3'- uUUCUC--------CCCCUCUCCCCCaGAC- -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 + 118130 0.73 0.55153
Target:  5'- aGAAGAGGGGG-GGGGGGcUCa- -3'
miRNA:   3'- -UUUCUCCCCCuCUCCCCcAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 102115 0.7 0.684261
Target:  5'- uGGGGAGGGGGAGGacGGGGaUCg- -3'
miRNA:   3'- -UUUCUCCCCCUCU--CCCCcAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 + 72594 0.68 0.837124
Target:  5'- uAGGGAGGGGc---GGGGGUUUGg -3'
miRNA:   3'- -UUUCUCCCCcucuCCCCCAGAC- -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 70537 0.73 0.547184
Target:  5'- uGAAGGuucagcuGGGGGAGuugguugaggagcuGGGGGGUCUGu -3'
miRNA:   3'- -UUUCU-------CCCCCUC--------------UCCCCCAGAC- -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 70328 0.66 0.896692
Target:  5'- uGGGAGGGgugaguucgacgguaGGGGAGGcGGGaUCUGu -3'
miRNA:   3'- uUUCUCCC---------------CCUCUCC-CCC-AGAC- -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 69341 0.72 0.584423
Target:  5'- gAGGGuGGGGGAGugggugauuGGGGGUCa- -3'
miRNA:   3'- -UUUCuCCCCCUCu--------CCCCCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 28264 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 28223 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 28090 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27957 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27917 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27877 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5'
MIMAT0001565 mghv-miR-M1-2 -52.6 NC_001826.1 - 27837 0.7 0.706165
Target:  5'- cGGGAGGGGGccGGGGaGGUCg- -3'
miRNA:   3'- uUUCUCCCCCucUCCC-CCAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.