miRNA display CGI


Results 1 - 9 of 9 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001569 mghv-miR-M1-6 -41.6 NC_001826.1 + 7340 0.66 1
Target:  5'- cAGGCCACCUCaACACAacacUUUCu -3'
miRNA:   3'- uUUUGGUGGAG-UGUGUc---AAAGu -5'
MIMAT0001569 mghv-miR-M1-6 -41.6 NC_001826.1 + 41530 0.66 0.999999
Target:  5'- aAGAACaAUCUCAUACAGUguUUCAc -3'
miRNA:   3'- -UUUUGgUGGAGUGUGUCA--AAGU- -5'
MIMAT0001569 mghv-miR-M1-6 -41.6 NC_001826.1 + 15878 0.67 0.999998
Target:  5'- --cGCCACCUC-CACAGa---- -3'
miRNA:   3'- uuuUGGUGGAGuGUGUCaaagu -5'
MIMAT0001569 mghv-miR-M1-6 -41.6 NC_001826.1 + 66477 0.67 0.999997
Target:  5'- --cACCACCuUCACG-GGUUUCAa -3'
miRNA:   3'- uuuUGGUGG-AGUGUgUCAAAGU- -5'
MIMAT0001569 mghv-miR-M1-6 -41.6 NC_001826.1 + 3501 0.67 0.999996
Target:  5'- --uGCCACCUUcCACAGUgggCGu -3'
miRNA:   3'- uuuUGGUGGAGuGUGUCAaa-GU- -5'
MIMAT0001569 mghv-miR-M1-6 -41.6 NC_001826.1 - 84936 0.7 0.999579
Target:  5'- uAAAGCCugggcauacuCCUCACACcuGGUUUCAg -3'
miRNA:   3'- -UUUUGGu---------GGAGUGUG--UCAAAGU- -5'
MIMAT0001569 mghv-miR-M1-6 -41.6 NC_001826.1 - 114738 0.71 0.998897
Target:  5'- cAAAACUgauCCUCugACAGUUUCu -3'
miRNA:   3'- -UUUUGGu--GGAGugUGUCAAAGu -5'
MIMAT0001569 mghv-miR-M1-6 -41.6 NC_001826.1 + 1318 0.72 0.997436
Target:  5'- -cAACCACCUCcCACAaUUUCAg -3'
miRNA:   3'- uuUUGGUGGAGuGUGUcAAAGU- -5'
MIMAT0001569 mghv-miR-M1-6 -41.6 NC_001826.1 - 1499 1.02 0.0943
Target:  5'- aAAAACCACCUCACACAGUUUCAg -3'
miRNA:   3'- -UUUUGGUGGAGUGUGUCAAAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.