Results 1 - 9 of 9 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| MIMAT0001569 | mghv-miR-M1-6 | -41.6 | NC_001826.1 | + | 7340 | 0.66 | 1 |
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Target: 5'- cAGGCCACCUCaACACAacacUUUCu -3' miRNA: 3'- uUUUGGUGGAG-UGUGUc---AAAGu -5' |
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| MIMAT0001569 | mghv-miR-M1-6 | -41.6 | NC_001826.1 | + | 41530 | 0.66 | 0.999999 |
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Target: 5'- aAGAACaAUCUCAUACAGUguUUCAc -3' miRNA: 3'- -UUUUGgUGGAGUGUGUCA--AAGU- -5' |
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| MIMAT0001569 | mghv-miR-M1-6 | -41.6 | NC_001826.1 | + | 15878 | 0.67 | 0.999998 |
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Target: 5'- --cGCCACCUC-CACAGa---- -3' miRNA: 3'- uuuUGGUGGAGuGUGUCaaagu -5' |
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| MIMAT0001569 | mghv-miR-M1-6 | -41.6 | NC_001826.1 | + | 66477 | 0.67 | 0.999997 |
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Target: 5'- --cACCACCuUCACG-GGUUUCAa -3' miRNA: 3'- uuuUGGUGG-AGUGUgUCAAAGU- -5' |
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| MIMAT0001569 | mghv-miR-M1-6 | -41.6 | NC_001826.1 | + | 3501 | 0.67 | 0.999996 |
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Target: 5'- --uGCCACCUUcCACAGUgggCGu -3' miRNA: 3'- uuuUGGUGGAGuGUGUCAaa-GU- -5' |
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| MIMAT0001569 | mghv-miR-M1-6 | -41.6 | NC_001826.1 | - | 84936 | 0.7 | 0.999579 |
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Target: 5'- uAAAGCCugggcauacuCCUCACACcuGGUUUCAg -3' miRNA: 3'- -UUUUGGu---------GGAGUGUG--UCAAAGU- -5' |
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| MIMAT0001569 | mghv-miR-M1-6 | -41.6 | NC_001826.1 | - | 114738 | 0.71 | 0.998897 |
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Target: 5'- cAAAACUgauCCUCugACAGUUUCu -3' miRNA: 3'- -UUUUGGu--GGAGugUGUCAAAGu -5' |
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| MIMAT0001569 | mghv-miR-M1-6 | -41.6 | NC_001826.1 | + | 1318 | 0.72 | 0.997436 |
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Target: 5'- -cAACCACCUCcCACAaUUUCAg -3' miRNA: 3'- uuUUGGUGGAGuGUGUcAAAGU- -5' |
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| MIMAT0001569 | mghv-miR-M1-6 | -41.6 | NC_001826.1 | - | 1499 | 1.02 | 0.0943 |
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Target: 5'- aAAAACCACCUCACACAGUUUCAg -3' miRNA: 3'- -UUUUGGUGGAGUGUGUCAAAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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