miRNA display CGI


Results 1 - 10 of 10 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001570 mghv-miR-M1-7-5p -48 NC_001826.1 + 4820 0.68 0.963231
Target:  5'- uAGGUccaguuuuUACUGCACCugcagcUCCACCUa- -3'
miRNA:   3'- -UCCA--------AUGGCGUGG------AGGUGGAaa -5'
MIMAT0001570 mghv-miR-M1-7-5p -48 NC_001826.1 + 25879 0.66 0.989106
Target:  5'- cAGaGUUGCCGCACCgaaACCa-- -3'
miRNA:   3'- -UC-CAAUGGCGUGGaggUGGaaa -5'
MIMAT0001570 mghv-miR-M1-7-5p -48 NC_001826.1 + 32502 0.66 0.990566
Target:  5'- uGGUUGCUaC-CCUCUACCUUUu -3'
miRNA:   3'- uCCAAUGGcGuGGAGGUGGAAA- -5'
MIMAT0001570 mghv-miR-M1-7-5p -48 NC_001826.1 + 63078 0.66 0.989106
Target:  5'- uGGGUUAUUGgauuaUGCCUCCACCg-- -3'
miRNA:   3'- -UCCAAUGGC-----GUGGAGGUGGaaa -5'
MIMAT0001570 mghv-miR-M1-7-5p -48 NC_001826.1 - 642 0.68 0.966903
Target:  5'- cAGGa-ACCGCugCUCUACCg-- -3'
miRNA:   3'- -UCCaaUGGCGugGAGGUGGaaa -5'
MIMAT0001570 mghv-miR-M1-7-5p -48 NC_001826.1 - 1799 1.02 0.021651
Target:  5'- gAGGUUACCGCACCUCCACCUUUa -3'
miRNA:   3'- -UCCAAUGGCGUGGAGGUGGAAA- -5'
MIMAT0001570 mghv-miR-M1-7-5p -48 NC_001826.1 - 10181 0.67 0.97901
Target:  5'- cAGGUUACUGU-CUUCCGCCc-- -3'
miRNA:   3'- -UCCAAUGGCGuGGAGGUGGaaa -5'
MIMAT0001570 mghv-miR-M1-7-5p -48 NC_001826.1 - 28628 0.79 0.476337
Target:  5'- cGGccGCCGCGCCUCCACCc-- -3'
miRNA:   3'- uCCaaUGGCGUGGAGGUGGaaa -5'
MIMAT0001570 mghv-miR-M1-7-5p -48 NC_001826.1 - 38695 0.66 0.993024
Target:  5'- uGGUUuaagGCCGcCACCgCCACCg-- -3'
miRNA:   3'- uCCAA----UGGC-GUGGaGGUGGaaa -5'
MIMAT0001570 mghv-miR-M1-7-5p -48 NC_001826.1 - 76901 0.67 0.985661
Target:  5'- aAGGcaUACCGCAUCUgccaCACCUUUg -3'
miRNA:   3'- -UCCa-AUGGCGUGGAg---GUGGAAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.