miRNA display CGI


Results 1 - 14 of 14 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 - 93281 0.71 0.999526
Target:  5'- -uUAGAGGcUGGGgGCGGUGa- -3'
miRNA:   3'- uuAUUUCC-ACCCgCGCUAUag -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 - 46026 0.67 0.999997
Target:  5'- cAUGGAGGUGGGauaGUGAg--- -3'
miRNA:   3'- uUAUUUCCACCCg--CGCUauag -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 - 40914 0.74 0.99304
Target:  5'- gAAUAAAGGUGGGCgGUGccUGUCu -3'
miRNA:   3'- -UUAUUUCCACCCG-CGCu-AUAG- -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 - 26697 0.68 0.999984
Target:  5'- uGUGGAGG-GGGCGUGGg--- -3'
miRNA:   3'- uUAUUUCCaCCCGCGCUauag -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 - 24417 0.71 0.999392
Target:  5'- --gGAGGGUGGGUcCGGUAUa -3'
miRNA:   3'- uuaUUUCCACCCGcGCUAUAg -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 - 23460 0.69 0.999913
Target:  5'- --cAGAGGcggGGGCGCGAg--- -3'
miRNA:   3'- uuaUUUCCa--CCCGCGCUauag -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 - 8729 0.69 0.999967
Target:  5'- --cAGGGGUGGGUGUGGc--- -3'
miRNA:   3'- uuaUUUCCACCCGCGCUauag -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 - 5620 0.69 0.999967
Target:  5'- --gGAAGGUGGGUuaGAggGUCu -3'
miRNA:   3'- uuaUUUCCACCCGcgCUa-UAG- -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 - 1837 1.02 0.096406
Target:  5'- cAAUAAAGGUGGGCGCGAUAUCc -3'
miRNA:   3'- -UUAUUUCCACCCGCGCUAUAG- -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 + 110910 0.66 1
Target:  5'- ---cGAGGUGGGUGCa----- -3'
miRNA:   3'- uuauUUCCACCCGCGcuauag -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 + 76756 0.66 1
Target:  5'- --cAAAGGUGuGGCagauGCGGUAUg -3'
miRNA:   3'- uuaUUUCCAC-CCG----CGCUAUAg -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 + 75783 0.67 0.999998
Target:  5'- -uUGGAGGcGGGCGCGcUGg- -3'
miRNA:   3'- uuAUUUCCaCCCGCGCuAUag -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 + 4387 0.67 0.999997
Target:  5'- --cAAAGGcGGGCGCuGAgGUCu -3'
miRNA:   3'- uuaUUUCCaCCCGCG-CUaUAG- -5'
MIMAT0001571 mghv-miR-M1-7-3p -41.3 NC_001826.1 + 1657 0.7 0.999788
Target:  5'- -uUAAAGGUGGagGUGCGGUAa- -3'
miRNA:   3'- uuAUUUCCACC--CGCGCUAUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.