Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| MIMAT0001572 | mghv-miR-M1-8 | -50 | NC_001826.1 | - | 37477 | 0.67 | 0.953753 |
|
Target: 5'- aGGCCu-ACCuCCCAGUGgcucccgaGGUGCUa -3' miRNA: 3'- -CUGGuuUGG-GGGUCAC--------UCACGA- -5' |
|||||||
| MIMAT0001572 | mghv-miR-M1-8 | -50 | NC_001826.1 | - | 73268 | 0.67 | 0.939193 |
|
Target: 5'- aGAUCAGgcuggguauGCCCCCGG-GGGUGUUg -3' miRNA: 3'- -CUGGUU---------UGGGGGUCaCUCACGA- -5' |
|||||||
| MIMAT0001572 | mghv-miR-M1-8 | -50 | NC_001826.1 | - | 80994 | 0.68 | 0.902077 |
|
Target: 5'- -uCCAGACCCUUAGgGAGUGUa -3' miRNA: 3'- cuGGUUUGGGGGUCaCUCACGa -5' |
|||||||
| MIMAT0001572 | mghv-miR-M1-8 | -50 | NC_001826.1 | + | 33497 | 0.69 | 0.879567 |
|
Target: 5'- cGGCCAAAcCCCCCAGUGAu---- -3' miRNA: 3'- -CUGGUUU-GGGGGUCACUcacga -5' |
|||||||
| MIMAT0001572 | mghv-miR-M1-8 | -50 | NC_001826.1 | + | 117899 | 0.7 | 0.827349 |
|
Target: 5'- aACCuGGCCCCgAG-GAGUGCUg -3' miRNA: 3'- cUGGuUUGGGGgUCaCUCACGA- -5' |
|||||||
| MIMAT0001572 | mghv-miR-M1-8 | -50 | NC_001826.1 | - | 72863 | 0.7 | 0.827349 |
|
Target: 5'- uGGCCAcGCCCCCAaGUGAGU-Ca -3' miRNA: 3'- -CUGGUuUGGGGGU-CACUCAcGa -5' |
|||||||
| MIMAT0001572 | mghv-miR-M1-8 | -50 | NC_001826.1 | + | 88365 | 0.74 | 0.622056 |
|
Target: 5'- aACCuucguGCCCCCAGUGAGgacGCUa -3' miRNA: 3'- cUGGuu---UGGGGGUCACUCa--CGA- -5' |
|||||||
| MIMAT0001572 | mghv-miR-M1-8 | -50 | NC_001826.1 | - | 3949 | 1.01 | 0.014529 |
|
Target: 5'- uGACCAAACCCCCAGUGAGUGCUg -3' miRNA: 3'- -CUGGUUUGGGGGUCACUCACGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home