miRNA display CGI


Results 1 - 8 of 8 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001572 mghv-miR-M1-8 -50 NC_001826.1 - 80994 0.68 0.902077
Target:  5'- -uCCAGACCCUUAGgGAGUGUa -3'
miRNA:   3'- cuGGUUUGGGGGUCaCUCACGa -5'
MIMAT0001572 mghv-miR-M1-8 -50 NC_001826.1 - 73268 0.67 0.939193
Target:  5'- aGAUCAGgcuggguauGCCCCCGG-GGGUGUUg -3'
miRNA:   3'- -CUGGUU---------UGGGGGUCaCUCACGA- -5'
MIMAT0001572 mghv-miR-M1-8 -50 NC_001826.1 - 72863 0.7 0.827349
Target:  5'- uGGCCAcGCCCCCAaGUGAGU-Ca -3'
miRNA:   3'- -CUGGUuUGGGGGU-CACUCAcGa -5'
MIMAT0001572 mghv-miR-M1-8 -50 NC_001826.1 - 37477 0.67 0.953753
Target:  5'- aGGCCu-ACCuCCCAGUGgcucccgaGGUGCUa -3'
miRNA:   3'- -CUGGuuUGG-GGGUCAC--------UCACGA- -5'
MIMAT0001572 mghv-miR-M1-8 -50 NC_001826.1 - 3949 1.01 0.014529
Target:  5'- uGACCAAACCCCCAGUGAGUGCUg -3'
miRNA:   3'- -CUGGUUUGGGGGUCACUCACGA- -5'
MIMAT0001572 mghv-miR-M1-8 -50 NC_001826.1 + 117899 0.7 0.827349
Target:  5'- aACCuGGCCCCgAG-GAGUGCUg -3'
miRNA:   3'- cUGGuUUGGGGgUCaCUCACGA- -5'
MIMAT0001572 mghv-miR-M1-8 -50 NC_001826.1 + 88365 0.74 0.622056
Target:  5'- aACCuucguGCCCCCAGUGAGgacGCUa -3'
miRNA:   3'- cUGGuu---UGGGGGUCACUCa--CGA- -5'
MIMAT0001572 mghv-miR-M1-8 -50 NC_001826.1 + 33497 0.69 0.879567
Target:  5'- cGGCCAAAcCCCCCAGUGAu---- -3'
miRNA:   3'- -CUGGUUU-GGGGGUCACUcacga -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.