miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 - 97665 0.71 0.99934
Target:  5'- cAAAGAGGuguuauuuUCCAGGCAGGUGa-- -3'
miRNA:   3'- -UUUUUCC--------AGGUCCGUUUACacu -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 - 81490 0.68 0.999982
Target:  5'- cAGAGGG-CCAGGCGGGggcagaGUGAc -3'
miRNA:   3'- uUUUUCCaGGUCCGUUUa-----CACU- -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 - 70566 0.66 1
Target:  5'- ---uGGGUCUAcGGguGGUGUGGu -3'
miRNA:   3'- uuuuUCCAGGU-CCguUUACACU- -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 - 68583 0.72 0.997975
Target:  5'- uAGAGGGUCCAGGUuAAUGa-- -3'
miRNA:   3'- uUUUUCCAGGUCCGuUUACacu -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 - 66488 0.66 0.999999
Target:  5'- ---cAGGUCguGGCAGAUGc-- -3'
miRNA:   3'- uuuuUCCAGguCCGUUUACacu -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 - 25217 0.74 0.992669
Target:  5'- aGAGGAGGUCCuGGCAgcGAUG-GAg -3'
miRNA:   3'- -UUUUUCCAGGuCCGU--UUACaCU- -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 - 5698 0.91 0.371851
Target:  5'- aAAAAAGGUCCAGGCAAAUG-GAg -3'
miRNA:   3'- -UUUUUCCAGGUCCGUUUACaCU- -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 - 2748 0.66 1
Target:  5'- -------aCCAGGUAAAUGUGGg -3'
miRNA:   3'- uuuuuccaGGUCCGUUUACACU- -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 - 792 0.68 0.999974
Target:  5'- cGGAGGGcCCGGGCA---GUGAg -3'
miRNA:   3'- uUUUUCCaGGUCCGUuuaCACU- -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 + 118539 0.66 0.999999
Target:  5'- -cGGGGGUCCgggGGGCGGggGUGu -3'
miRNA:   3'- uuUUUCCAGG---UCCGUUuaCACu -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 + 118503 0.7 0.999484
Target:  5'- --cAGGGUCCGGGUGccUGUGGg -3'
miRNA:   3'- uuuUUCCAGGUCCGUuuACACU- -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 + 105556 0.7 0.999693
Target:  5'- uAGGAGGGaCCacuaGGGUAAGUGUGAg -3'
miRNA:   3'- -UUUUUCCaGG----UCCGUUUACACU- -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 + 95139 0.69 0.999929
Target:  5'- ---cAGG-CCGGGCAGAUG-GAg -3'
miRNA:   3'- uuuuUCCaGGUCCGUUUACaCU- -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 + 75535 0.67 0.999996
Target:  5'- -cAGAGGUCCAGGCuucuccuGUcUGAc -3'
miRNA:   3'- uuUUUCCAGGUCCGuu-----UAcACU- -5'
MIMAT0001573 mghv-miR-M1-9 -41.6 NC_001826.1 + 42311 0.66 1
Target:  5'- uGAGAAGGU---GGCAAAUGUGu -3'
miRNA:   3'- -UUUUUCCAgguCCGUUUACACu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.