miRNA display CGI


Results 1 - 14 of 14 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 + 223397 0.67 1
Target:  5'- ---aACGGGAAGGCUAa--- -3'
miRNA:   3'- agagUGCCCUUCCGAUcaau -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 + 206374 0.68 0.999999
Target:  5'- gUCUUACaaGGGAAGGCU-GUUc -3'
miRNA:   3'- -AGAGUG--CCCUUCCGAuCAAu -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 - 204229 0.68 1
Target:  5'- cUUCACGGGAagaagAGGCUAa--- -3'
miRNA:   3'- aGAGUGCCCU-----UCCGAUcaau -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 + 198758 0.75 0.995996
Target:  5'- uUCccgCAUGGGAAGGCUGGa-- -3'
miRNA:   3'- -AGa--GUGCCCUUCCGAUCaau -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 - 194604 0.68 0.999999
Target:  5'- -gUCGCGGGAuggcGGGCU-GUUGc -3'
miRNA:   3'- agAGUGCCCU----UCCGAuCAAU- -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 - 191801 0.71 0.999922
Target:  5'- gUUUCAgGGGAAGGCUGu--- -3'
miRNA:   3'- -AGAGUgCCCUUCCGAUcaau -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 + 172961 0.68 0.999998
Target:  5'- gUCUUA-GGGAAGGCUgAGUUc -3'
miRNA:   3'- -AGAGUgCCCUUCCGA-UCAAu -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 + 167693 0.66 1
Target:  5'- -gUCACGGGgcGGCgcgAGggAg -3'
miRNA:   3'- agAGUGCCCuuCCGa--UCaaU- -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 + 100798 0.76 0.992274
Target:  5'- gUCUUGCGGGAAGGC-GGUg- -3'
miRNA:   3'- -AGAGUGCCCUUCCGaUCAau -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 + 94674 0.66 1
Target:  5'- --cCACGGGG-GGCUGGg-- -3'
miRNA:   3'- agaGUGCCCUuCCGAUCaau -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 - 91570 0.68 0.999999
Target:  5'- gCUCACGGuGGAGGCg----- -3'
miRNA:   3'- aGAGUGCC-CUUCCGaucaau -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 - 41141 0.71 0.999895
Target:  5'- gUUCA-GGGAAGGCUAGa-- -3'
miRNA:   3'- aGAGUgCCCUUCCGAUCaau -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 - 28219 1.02 0.142502
Target:  5'- cUCUCACGGGAAGGCUAGUUAg -3'
miRNA:   3'- -AGAGUGCCCUUCCGAUCAAU- -5'
MIMAT0001574 hcmv-miR-UL22A -42.2 NC_006273.1 + 1104 0.68 0.999999
Target:  5'- -gUCGCGGGAuggcGGGCU-GUUGc -3'
miRNA:   3'- agAGUGCCCU----UCCGAuCAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.