miRNA display CGI


Results 1 - 18 of 18 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 + 31122 0.66 0.999089
Target:  5'- cGCCUGGcgagcgcgAUCUCACgCGUCGg-- -3'
miRNA:   3'- uCGGACC--------UAGAGUG-GCAGUgaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 + 133396 0.66 0.999089
Target:  5'- aGGCCuUGGAUCcucCGCCGcCGCg- -3'
miRNA:   3'- -UCGG-ACCUAGa--GUGGCaGUGaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 - 86979 0.66 0.998633
Target:  5'- cGGCCUGGAggUCugCG-CGCa- -3'
miRNA:   3'- -UCGGACCUagAGugGCaGUGaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 - 202981 0.66 0.998633
Target:  5'- cGGUCaaGuUCUCACCGUCACg- -3'
miRNA:   3'- -UCGGacCuAGAGUGGCAGUGaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 + 116633 0.66 0.998633
Target:  5'- uGCCUGGg---CugCGUCACUUc -3'
miRNA:   3'- uCGGACCuagaGugGCAGUGAA- -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 + 131183 0.67 0.997596
Target:  5'- gAGUCUGGAccgcaUCGCCGUCAa-- -3'
miRNA:   3'- -UCGGACCUag---AGUGGCAGUgaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 - 27845 0.67 0.997596
Target:  5'- uGGUaCUGGGUUguucCACCGUCACg- -3'
miRNA:   3'- -UCG-GACCUAGa---GUGGCAGUGaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 + 73268 0.67 0.99713
Target:  5'- gAGCCUGGuggaaCUCAUCaGUCGCg- -3'
miRNA:   3'- -UCGGACCua---GAGUGG-CAGUGaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 + 65911 0.68 0.993541
Target:  5'- cGGCCUGGAUCUgCAgCGcaugCACg- -3'
miRNA:   3'- -UCGGACCUAGA-GUgGCa---GUGaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 - 193733 0.69 0.98861
Target:  5'- cGGCauuaUGGA-CUUGCCGUCGCUg -3'
miRNA:   3'- -UCGg---ACCUaGAGUGGCAGUGAa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 - 27415 0.69 0.988457
Target:  5'- cGCCucucucaUGGAUCcacugUCACCGUCGCg- -3'
miRNA:   3'- uCGG-------ACCUAG-----AGUGGCAGUGaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 + 105432 0.69 0.985239
Target:  5'- cAGCCccagggacgcGGGUCUCACCGUCGg-- -3'
miRNA:   3'- -UCGGa---------CCUAGAGUGGCAGUgaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 - 162760 0.71 0.963867
Target:  5'- gGGCCgGGA-CUCACCGUCGu-- -3'
miRNA:   3'- -UCGGaCCUaGAGUGGCAGUgaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 + 148467 0.71 0.960163
Target:  5'- cGGCCUGGA-CUCACCuUUACg- -3'
miRNA:   3'- -UCGGACCUaGAGUGGcAGUGaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 - 100309 0.73 0.908509
Target:  5'- cGCUauUGGAUCUCACCGUCu--- -3'
miRNA:   3'- uCGG--ACCUAGAGUGGCAGugaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 - 55152 0.74 0.894914
Target:  5'- uGCCUGGuuagUUCGCCGUCGCc- -3'
miRNA:   3'- uCGGACCua--GAGUGGCAGUGaa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 - 125460 0.76 0.792977
Target:  5'- cGGCCaGGAUUUCACCGcCGCUa -3'
miRNA:   3'- -UCGGaCCUAGAGUGGCaGUGAa -5'
MIMAT0001577 hcmv-miR-UL112 -48.6 NC_006273.1 - 164650 1.02 0.038197
Target:  5'- cAGCCUGGAUCUCACCGUCACUUa -3'
miRNA:   3'- -UCGGACCUAGAGUGGCAGUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.