miRNA display CGI


Results 21 - 40 of 60 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 105921 0.68 0.997842
Target:  5'- gGGUGAAaccGAugucGGGGGuGGGCGGc -3'
miRNA:   3'- gCCACUU---CU----UCCCCuCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 193348 0.68 0.997415
Target:  5'- aGGUGAGGuuGGGGcGGAUa- -3'
miRNA:   3'- gCCACUUCuuCCCCuCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 95363 0.68 0.997415
Target:  5'- -aGUGggGGAGGGGAGcGucACGGg -3'
miRNA:   3'- gcCACuuCUUCCCCUC-C--UGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 119331 0.68 0.997415
Target:  5'- aGGagGAAGAAGaGGaaGAGGACGAc -3'
miRNA:   3'- gCCa-CUUCUUC-CC--CUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 60433 0.68 0.99692
Target:  5'- aGGaUGGAGcuggacagugucGAGGaGGAGGACGAu -3'
miRNA:   3'- gCC-ACUUC------------UUCC-CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 99159 0.68 0.99692
Target:  5'- aCGGUGggGAaaAGGaGGGGGcCGu -3'
miRNA:   3'- -GCCACuuCU--UCC-CCUCCuGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 115540 0.68 0.996349
Target:  5'- gGGUGAgaaagaggaGGAuGGGGGGGACc- -3'
miRNA:   3'- gCCACU---------UCUuCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 167701 0.69 0.994947
Target:  5'- gCGGcgcGAGGGAGGaGGAGGugGu -3'
miRNA:   3'- -GCCa--CUUCUUCC-CCUCCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 94854 0.69 0.994097
Target:  5'- aCGGUGGu---GGGGAcGGGCGAc -3'
miRNA:   3'- -GCCACUucuuCCCCU-CCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 218360 0.69 0.993136
Target:  5'- gCGGacgaUGAGGAgcAGGGaGAGGAUGAu -3'
miRNA:   3'- -GCC----ACUUCU--UCCC-CUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 32501 0.69 0.992053
Target:  5'- gCGGUGGcAGcGGGGGuGGugGGg -3'
miRNA:   3'- -GCCACU-UCuUCCCCuCCugCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 194082 0.69 0.992053
Target:  5'- uGcGUGuAGAAGcGGGGGGAUGAa -3'
miRNA:   3'- gC-CACuUCUUC-CCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94701 0.69 0.992053
Target:  5'- uCGGaUGggGGgucgagcgGGGGGAGGGCa- -3'
miRNA:   3'- -GCC-ACuuCU--------UCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 75067 0.7 0.989485
Target:  5'- gCGGUGGGcucGAGGGGGgAGGugGu -3'
miRNA:   3'- -GCCACUU---CUUCCCC-UCCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 231445 0.7 0.987978
Target:  5'- -cGUGuGGggGGGGGGGGCa- -3'
miRNA:   3'- gcCACuUCuuCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 43396 0.7 0.987495
Target:  5'- aCGGUGAgcgccccaccuagaGGGAGGGGGGGuaguuuaauaGCGGa -3'
miRNA:   3'- -GCCACU--------------UCUUCCCCUCC----------UGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 30459 0.7 0.98447
Target:  5'- gCGGaUGAGGAGGcGGAGGACa- -3'
miRNA:   3'- -GCC-ACUUCUUCcCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 150322 0.7 0.98447
Target:  5'- uGGUGGuGGAAgcGGuGGAGGACGAc -3'
miRNA:   3'- gCCACU-UCUU--CC-CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 184545 0.7 0.98447
Target:  5'- uGGUGccccacgccGGGAAGGGGAcGACGAg -3'
miRNA:   3'- gCCAC---------UUCUUCCCCUcCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 130573 0.7 0.98447
Target:  5'- -aGUGggGGAGGGGGaaacGGugGAa -3'
miRNA:   3'- gcCACuuCUUCCCCU----CCugCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.