Results 1 - 18 of 18 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | + | 48624 | 0.66 | 1 |
Target: 5'- cGACGUCG-CACACCUugaaacgccGUCGg-- -3' miRNA: 3'- -CUGUAGCaGUGUGGA---------UAGUauu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | + | 104580 | 0.66 | 1 |
Target: 5'- -uCAUCGUCGCGCCgg-CAc-- -3' miRNA: 3'- cuGUAGCAGUGUGGauaGUauu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | + | 145455 | 0.66 | 1 |
Target: 5'- -uCAUCGUCACGCCcgugGUCu--- -3' miRNA: 3'- cuGUAGCAGUGUGGa---UAGuauu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | - | 144457 | 0.66 | 1 |
Target: 5'- --gGUCGUCGCACCgcUCGg-- -3' miRNA: 3'- cugUAGCAGUGUGGauAGUauu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | + | 158988 | 0.66 | 1 |
Target: 5'- uGACGUCGUUGCugCUGcugcucuugccuUCAUGg -3' miRNA: 3'- -CUGUAGCAGUGugGAU------------AGUAUu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | - | 57666 | 0.66 | 1 |
Target: 5'- gGACAUC-UCGgACCUGUCGg-- -3' miRNA: 3'- -CUGUAGcAGUgUGGAUAGUauu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | - | 207658 | 0.67 | 1 |
Target: 5'- cGACuguUCGUCgaGCACCcGUCAUGGu -3' miRNA: 3'- -CUGu--AGCAG--UGUGGaUAGUAUU- -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | - | 202371 | 0.67 | 1 |
Target: 5'- aACGcucUCGUCAgGCUUGUCAUGGu -3' miRNA: 3'- cUGU---AGCAGUgUGGAUAGUAUU- -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | - | 17170 | 0.67 | 1 |
Target: 5'- aGACAUCacuGUCACAguuccgugUCUGUCAUAAa -3' miRNA: 3'- -CUGUAG---CAGUGU--------GGAUAGUAUU- -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | + | 202204 | 0.67 | 1 |
Target: 5'- aGGCuuUCGcCACACCUAUCcUGAa -3' miRNA: 3'- -CUGu-AGCaGUGUGGAUAGuAUU- -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | + | 188016 | 0.69 | 1 |
Target: 5'- cGCGUCGUCGUugCUAUCGUc- -3' miRNA: 3'- cUGUAGCAGUGugGAUAGUAuu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | - | 115033 | 0.69 | 0.999999 |
Target: 5'- aGACGUgGUCGCGCCgAUCGc-- -3' miRNA: 3'- -CUGUAgCAGUGUGGaUAGUauu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | + | 34106 | 0.7 | 0.999999 |
Target: 5'- -cCGUCGUCGCGCCcGUCGc-- -3' miRNA: 3'- cuGUAGCAGUGUGGaUAGUauu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | + | 220266 | 0.71 | 0.999981 |
Target: 5'- gGACGUccCGUCACGCCUAgcaCAUAc -3' miRNA: 3'- -CUGUA--GCAGUGUGGAUa--GUAUu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | + | 191512 | 0.71 | 0.999981 |
Target: 5'- uGCGUUGUCuCGCCUAUCAg-- -3' miRNA: 3'- cUGUAGCAGuGUGGAUAGUauu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | + | 148395 | 0.73 | 0.999725 |
Target: 5'- uGCGUCugGUCACGCCUGUCGg-- -3' miRNA: 3'- cUGUAG--CAGUGUGGAUAGUauu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | + | 137789 | 0.75 | 0.99909 |
Target: 5'- cGGCGUCGUCgacGCAUCUGUCAUu- -3' miRNA: 3'- -CUGUAGCAG---UGUGGAUAGUAuu -5' |
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MIMAT0001580 | hcmv-miR-US5-2 | -41.5 | NC_006273.1 | - | 202499 | 1.02 | 0.184508 |
Target: 5'- aGACAUCGUCACACCUAUCAUAAa -3' miRNA: 3'- -CUGUAGCAGUGUGGAUAGUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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