miRNA display CGI


Results 1 - 18 of 18 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 + 48624 0.66 1
Target:  5'- cGACGUCG-CACACCUugaaacgccGUCGg-- -3'
miRNA:   3'- -CUGUAGCaGUGUGGA---------UAGUauu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 + 104580 0.66 1
Target:  5'- -uCAUCGUCGCGCCgg-CAc-- -3'
miRNA:   3'- cuGUAGCAGUGUGGauaGUauu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 + 145455 0.66 1
Target:  5'- -uCAUCGUCACGCCcgugGUCu--- -3'
miRNA:   3'- cuGUAGCAGUGUGGa---UAGuauu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 - 144457 0.66 1
Target:  5'- --gGUCGUCGCACCgcUCGg-- -3'
miRNA:   3'- cugUAGCAGUGUGGauAGUauu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 + 158988 0.66 1
Target:  5'- uGACGUCGUUGCugCUGcugcucuugccuUCAUGg -3'
miRNA:   3'- -CUGUAGCAGUGugGAU------------AGUAUu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 - 57666 0.66 1
Target:  5'- gGACAUC-UCGgACCUGUCGg-- -3'
miRNA:   3'- -CUGUAGcAGUgUGGAUAGUauu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 - 207658 0.67 1
Target:  5'- cGACuguUCGUCgaGCACCcGUCAUGGu -3'
miRNA:   3'- -CUGu--AGCAG--UGUGGaUAGUAUU- -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 - 202371 0.67 1
Target:  5'- aACGcucUCGUCAgGCUUGUCAUGGu -3'
miRNA:   3'- cUGU---AGCAGUgUGGAUAGUAUU- -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 - 17170 0.67 1
Target:  5'- aGACAUCacuGUCACAguuccgugUCUGUCAUAAa -3'
miRNA:   3'- -CUGUAG---CAGUGU--------GGAUAGUAUU- -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 + 202204 0.67 1
Target:  5'- aGGCuuUCGcCACACCUAUCcUGAa -3'
miRNA:   3'- -CUGu-AGCaGUGUGGAUAGuAUU- -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 + 188016 0.69 1
Target:  5'- cGCGUCGUCGUugCUAUCGUc- -3'
miRNA:   3'- cUGUAGCAGUGugGAUAGUAuu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 - 115033 0.69 0.999999
Target:  5'- aGACGUgGUCGCGCCgAUCGc-- -3'
miRNA:   3'- -CUGUAgCAGUGUGGaUAGUauu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 + 34106 0.7 0.999999
Target:  5'- -cCGUCGUCGCGCCcGUCGc-- -3'
miRNA:   3'- cuGUAGCAGUGUGGaUAGUauu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 + 220266 0.71 0.999981
Target:  5'- gGACGUccCGUCACGCCUAgcaCAUAc -3'
miRNA:   3'- -CUGUA--GCAGUGUGGAUa--GUAUu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 + 191512 0.71 0.999981
Target:  5'- uGCGUUGUCuCGCCUAUCAg-- -3'
miRNA:   3'- cUGUAGCAGuGUGGAUAGUauu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 + 148395 0.73 0.999725
Target:  5'- uGCGUCugGUCACGCCUGUCGg-- -3'
miRNA:   3'- cUGUAG--CAGUGUGGAUAGUauu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 + 137789 0.75 0.99909
Target:  5'- cGGCGUCGUCgacGCAUCUGUCAUu- -3'
miRNA:   3'- -CUGUAGCAG---UGUGGAUAGUAuu -5'
MIMAT0001580 hcmv-miR-US5-2 -41.5 NC_006273.1 - 202499 1.02 0.184508
Target:  5'- aGACAUCGUCACACCUAUCAUAAa -3'
miRNA:   3'- -CUGUAGCAGUGUGGAUAGUAUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.