Results 1 - 20 of 45 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 221516 | 1.01 | 0.039854 |
Target: 5'- cUCAUCCACCUGAACAGACCGCUa -3' miRNA: 3'- -AGUAGGUGGACUUGUCUGGCGA- -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 22401 | 0.75 | 0.827258 |
Target: 5'- aCGUCCGCCUGuacGCGGACCGa- -3' miRNA: 3'- aGUAGGUGGACu--UGUCUGGCga -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 59382 | 0.74 | 0.885195 |
Target: 5'- cUCAUCCACUUGcACAuGGCCGCc -3' miRNA: 3'- -AGUAGGUGGACuUGU-CUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 35719 | 0.72 | 0.930619 |
Target: 5'- -gAUCCGCCUGGGCGGcucgcCCGCUu -3' miRNA: 3'- agUAGGUGGACUUGUCu----GGCGA- -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 195480 | 0.72 | 0.941132 |
Target: 5'- gCGUCCACCUaGGAgGGugCGCg -3' miRNA: 3'- aGUAGGUGGA-CUUgUCugGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 235059 | 0.72 | 0.941132 |
Target: 5'- gCGUCCACCUaGGAgGGugCGCg -3' miRNA: 3'- aGUAGGUGGA-CUUgUCugGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 198871 | 0.71 | 0.954866 |
Target: 5'- -gGUCCGCCggucucGACGGACCGCg -3' miRNA: 3'- agUAGGUGGac----UUGUCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 19880 | 0.71 | 0.958915 |
Target: 5'- cCGUUgACCUGGACcGACCGCc -3' miRNA: 3'- aGUAGgUGGACUUGuCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 130214 | 0.71 | 0.962706 |
Target: 5'- cCggCUACCUGGGCgAGGCCGCg -3' miRNA: 3'- aGuaGGUGGACUUG-UCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 221717 | 0.71 | 0.966247 |
Target: 5'- gUCAUCCACUUGGAgAGcucCCGCg -3' miRNA: 3'- -AGUAGGUGGACUUgUCu--GGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 195952 | 0.7 | 0.975437 |
Target: 5'- gCGUCCACCgGGuagaaccccGCGGGCCGCc -3' miRNA: 3'- aGUAGGUGGaCU---------UGUCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 234587 | 0.7 | 0.975437 |
Target: 5'- gCGUCCACCgGGuagaaccccGCGGGCCGCc -3' miRNA: 3'- aGUAGGUGGaCU---------UGUCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 143091 | 0.7 | 0.97805 |
Target: 5'- cCcgUgGCCgUGAGCAGACCGCg -3' miRNA: 3'- aGuaGgUGG-ACUUGUCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 60241 | 0.7 | 0.97805 |
Target: 5'- gCGUCCACCgcgacUGGGCacggcgGGACCGCUg -3' miRNA: 3'- aGUAGGUGG-----ACUUG------UCUGGCGA- -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 117300 | 0.69 | 0.984658 |
Target: 5'- gCGUCCACgCUGuugcccAACAGGCCGUa -3' miRNA: 3'- aGUAGGUG-GAC------UUGUCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 154347 | 0.69 | 0.989631 |
Target: 5'- -gAUCCGCCUGAGC-GAgCGCc -3' miRNA: 3'- agUAGGUGGACUUGuCUgGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 151907 | 0.69 | 0.989631 |
Target: 5'- cUCGUCCACCUGcGACuGGAuCUGCUc -3' miRNA: 3'- -AGUAGGUGGAC-UUG-UCU-GGCGA- -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 43613 | 0.68 | 0.994195 |
Target: 5'- -uGUCCAUCgugGAcgaauaGCAGACCGCg -3' miRNA: 3'- agUAGGUGGa--CU------UGUCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 126979 | 0.68 | 0.995035 |
Target: 5'- aCGUCgUACCUGAcguGgAGACCGCg -3' miRNA: 3'- aGUAG-GUGGACU---UgUCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 42711 | 0.68 | 0.995035 |
Target: 5'- aCAUCUACgUGGACAGcuucCCGCa -3' miRNA: 3'- aGUAGGUGgACUUGUCu---GGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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