Results 1 - 20 of 45 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 19880 | 0.71 | 0.958915 |
Target: 5'- cCGUUgACCUGGACcGACCGCc -3' miRNA: 3'- aGUAGgUGGACUUGuCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 22401 | 0.75 | 0.827258 |
Target: 5'- aCGUCCGCCUGuacGCGGACCGa- -3' miRNA: 3'- aGUAGGUGGACu--UGUCUGGCga -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 29292 | 0.66 | 0.999217 |
Target: 5'- uUUGUCCACCgacGCGcGACCGCg -3' miRNA: 3'- -AGUAGGUGGacuUGU-CUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 29897 | 0.66 | 0.998815 |
Target: 5'- aUCAUCCGCCaccacGGGCAGuucauGCCGUUg -3' miRNA: 3'- -AGUAGGUGGa----CUUGUC-----UGGCGA- -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 35719 | 0.72 | 0.930619 |
Target: 5'- -gAUCCGCCUGGGCGGcucgcCCGCUu -3' miRNA: 3'- agUAGGUGGACUUGUCu----GGCGA- -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 37481 | 0.67 | 0.997888 |
Target: 5'- uUCcUCUGCCUGGGCAcgcgcgucGGCCGCg -3' miRNA: 3'- -AGuAGGUGGACUUGU--------CUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 41177 | 0.67 | 0.996981 |
Target: 5'- gCGUCCGCCcGAgcGCAGACgGUg -3' miRNA: 3'- aGUAGGUGGaCU--UGUCUGgCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 42711 | 0.68 | 0.995035 |
Target: 5'- aCAUCUACgUGGACAGcuucCCGCa -3' miRNA: 3'- aGUAGGUGgACUUGUCu---GGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 43613 | 0.68 | 0.994195 |
Target: 5'- -uGUCCAUCgugGAcgaauaGCAGACCGCg -3' miRNA: 3'- agUAGGUGGa--CU------UGUCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 46157 | 0.66 | 0.998815 |
Target: 5'- cUCAUCgGCCUcGGGCGGcccgGCCGCc -3' miRNA: 3'- -AGUAGgUGGA-CUUGUC----UGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 56952 | 0.67 | 0.997888 |
Target: 5'- uUC-UCCACggcGAACAGACCGUUg -3' miRNA: 3'- -AGuAGGUGga-CUUGUCUGGCGA- -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 59382 | 0.74 | 0.885195 |
Target: 5'- cUCAUCCACUUGcACAuGGCCGCc -3' miRNA: 3'- -AGUAGGUGGACuUGU-CUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 60241 | 0.7 | 0.97805 |
Target: 5'- gCGUCCACCgcgacUGGGCacggcgGGACCGCUg -3' miRNA: 3'- aGUAGGUGG-----ACUUG------UCUGGCGA- -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 66089 | 0.68 | 0.995341 |
Target: 5'- gCGUaCCGCCUGcugcgccgccgauuGCGGACCGCa -3' miRNA: 3'- aGUA-GGUGGACu-------------UGUCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 91732 | 0.66 | 0.998248 |
Target: 5'- uUCAUCCACCaUGAGCcacgaGGAacuaaCCGCg -3' miRNA: 3'- -AGUAGGUGG-ACUUG-----UCU-----GGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 101294 | 0.66 | 0.999217 |
Target: 5'- aUCGUCCGCC-----GGACCGCa -3' miRNA: 3'- -AGUAGGUGGacuugUCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 102178 | 0.66 | 0.999034 |
Target: 5'- gCGagCACCUcGGugAGACCGCg -3' miRNA: 3'- aGUagGUGGA-CUugUCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 105402 | 0.66 | 0.998555 |
Target: 5'- --uUCCcCCUGAAC-GACCGCc -3' miRNA: 3'- aguAGGuGGACUUGuCUGGCGa -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | - | 111621 | 0.67 | 0.995773 |
Target: 5'- cCA-CCACCUGGAuCAcGCCGCUg -3' miRNA: 3'- aGUaGGUGGACUU-GUcUGGCGA- -5' |
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MIMAT0001582 | hcmv-miR-US25-2-5p | -48.6 | NC_006273.1 | + | 112585 | 0.66 | 0.999217 |
Target: 5'- uUCuUCUACCUGGcuggcGCAGugCGCc -3' miRNA: 3'- -AGuAGGUGGACU-----UGUCugGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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