miRNA display CGI


Results 21 - 40 of 45 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 153368 0.67 0.996419
Target:  5'- gUCGUCgUACUUGGGCguGGGCCGCg -3'
miRNA:   3'- -AGUAG-GUGGACUUG--UCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 164889 0.67 0.996419
Target:  5'- -uGUCCGCCcGAGCAgGugCGCg -3'
miRNA:   3'- agUAGGUGGaCUUGU-CugGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 138424 0.67 0.995773
Target:  5'- ---cCCGCCUGcccGCAGGCCGUg -3'
miRNA:   3'- aguaGGUGGACu--UGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 111621 0.67 0.995773
Target:  5'- cCA-CCACCUGGAuCAcGCCGCUg -3'
miRNA:   3'- aGUaGGUGGACUU-GUcUGGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 66089 0.68 0.995341
Target:  5'- gCGUaCCGCCUGcugcgccgccgauuGCGGACCGCa -3'
miRNA:   3'- aGUA-GGUGGACu-------------UGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 126979 0.68 0.995035
Target:  5'- aCGUCgUACCUGAcguGgAGACCGCg -3'
miRNA:   3'- aGUAG-GUGGACU---UgUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 42711 0.68 0.995035
Target:  5'- aCAUCUACgUGGACAGcuucCCGCa -3'
miRNA:   3'- aGUAGGUGgACUUGUCu---GGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 43613 0.68 0.994195
Target:  5'- -uGUCCAUCgugGAcgaauaGCAGACCGCg -3'
miRNA:   3'- agUAGGUGGa--CU------UGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 151907 0.69 0.989631
Target:  5'- cUCGUCCACCUGcGACuGGAuCUGCUc -3'
miRNA:   3'- -AGUAGGUGGAC-UUG-UCU-GGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 154347 0.69 0.989631
Target:  5'- -gAUCCGCCUGAGC-GAgCGCc -3'
miRNA:   3'- agUAGGUGGACUUGuCUgGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 117300 0.69 0.984658
Target:  5'- gCGUCCACgCUGuugcccAACAGGCCGUa -3'
miRNA:   3'- aGUAGGUG-GAC------UUGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 60241 0.7 0.97805
Target:  5'- gCGUCCACCgcgacUGGGCacggcgGGACCGCUg -3'
miRNA:   3'- aGUAGGUGG-----ACUUG------UCUGGCGA- -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 143091 0.7 0.97805
Target:  5'- cCcgUgGCCgUGAGCAGACCGCg -3'
miRNA:   3'- aGuaGgUGG-ACUUGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 234587 0.7 0.975437
Target:  5'- gCGUCCACCgGGuagaaccccGCGGGCCGCc -3'
miRNA:   3'- aGUAGGUGGaCU---------UGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 195952 0.7 0.975437
Target:  5'- gCGUCCACCgGGuagaaccccGCGGGCCGCc -3'
miRNA:   3'- aGUAGGUGGaCU---------UGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 - 221717 0.71 0.966247
Target:  5'- gUCAUCCACUUGGAgAGcucCCGCg -3'
miRNA:   3'- -AGUAGGUGGACUUgUCu--GGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 130214 0.71 0.962706
Target:  5'- cCggCUACCUGGGCgAGGCCGCg -3'
miRNA:   3'- aGuaGGUGGACUUG-UCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 19880 0.71 0.958915
Target:  5'- cCGUUgACCUGGACcGACCGCc -3'
miRNA:   3'- aGUAGgUGGACUUGuCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 198871 0.71 0.954866
Target:  5'- -gGUCCGCCggucucGACGGACCGCg -3'
miRNA:   3'- agUAGGUGGac----UUGUCUGGCGa -5'
MIMAT0001582 hcmv-miR-US25-2-5p -48.6 NC_006273.1 + 195480 0.72 0.941132
Target:  5'- gCGUCCACCUaGGAgGGugCGCg -3'
miRNA:   3'- aGUAGGUGGA-CUUgUCugGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.