miRNA display CGI


Results 1 - 20 of 48 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 234612 0.7 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 234570 0.68 0.901702
Target:  5'- -cCCCGCGGgccgCCGGGCGCc--- -3'
miRNA:   3'- gcGGGUGCCa---GGCCCGUGuuag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 232952 0.67 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 226519 1.03 0.011163
Target:  5'- gCGCCCACGGUCCGGGCACAAUCa -3'
miRNA:   3'- -GCGGGUGCCAGGCCCGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 220506 0.76 0.531661
Target:  5'- aCGUCCGCGG-CCGGGaCGCAGUUu -3'
miRNA:   3'- -GCGGGUGCCaGGCCC-GUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 220028 0.68 0.920184
Target:  5'- aCGCUCGuggUGGUgCGGGCACAGa- -3'
miRNA:   3'- -GCGGGU---GCCAgGCCCGUGUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 211539 0.66 0.962068
Target:  5'- uGCCCcaACGGUaCGGGCugcagguaaaguGCGAUCa -3'
miRNA:   3'- gCGGG--UGCCAgGCCCG------------UGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 206573 0.66 0.954484
Target:  5'- gGCCC-CGGUCgCGGGUAguAUg -3'
miRNA:   3'- gCGGGuGCCAG-GCCCGUguUAg -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 197587 0.67 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 195969 0.68 0.901702
Target:  5'- -cCCCGCGGgccgCCGGGCGCc--- -3'
miRNA:   3'- gcGGGUGCCa---GGCCCGUGuuag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 195927 0.7 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 189308 0.68 0.925841
Target:  5'- aCGCCgC-CGGUCCGGGCccccaccacgcgGCuGUCg -3'
miRNA:   3'- -GCGG-GuGCCAGGCCCG------------UGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 176090 0.68 0.895043
Target:  5'- gGCCCACGaUCCGGGUu--AUCu -3'
miRNA:   3'- gCGGGUGCcAGGCCCGuguUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 166102 0.72 0.749627
Target:  5'- gCGCCCACGGUCUGGccguCAUcGUCg -3'
miRNA:   3'- -GCGGGUGCCAGGCCc---GUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 165722 0.66 0.954484
Target:  5'- gCGCCCguuGGUgaauguuaCCGGGCGCGAUg -3'
miRNA:   3'- -GCGGGug-CCA--------GGCCCGUGUUAg -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 163293 0.66 0.968727
Target:  5'- uCGCCCGCGcUgUGGGCGCugcugGGUCg -3'
miRNA:   3'- -GCGGGUGCcAgGCCCGUG-----UUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 153640 0.66 0.965511
Target:  5'- gGCCaACGGUCgacgcaGGGCACGcgCg -3'
miRNA:   3'- gCGGgUGCCAGg-----CCCGUGUuaG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 150557 0.67 0.936392
Target:  5'- gGCCCACGGgccaaCCGucCACGGUCu -3'
miRNA:   3'- gCGGGUGCCa----GGCccGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 150022 0.69 0.873622
Target:  5'- uGCUCACGGcuugcguggaggUCUGGGCGCGAg- -3'
miRNA:   3'- gCGGGUGCC------------AGGCCCGUGUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 146292 0.68 0.895043
Target:  5'- aGUCCugGGUgugUCGGGCcgcgGCAGUCg -3'
miRNA:   3'- gCGGGugCCA---GGCCCG----UGUUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.