miRNA display CGI


Results 21 - 40 of 48 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 234570 0.68 0.901702
Target:  5'- -cCCCGCGGgccgCCGGGCGCc--- -3'
miRNA:   3'- gcGGGUGCCa---GGCCCGUGuuag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 195969 0.68 0.901702
Target:  5'- -cCCCGCGGgccgCCGGGCGCc--- -3'
miRNA:   3'- gcGGGUGCCa---GGCCCGUGuuag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 58178 0.68 0.908113
Target:  5'- -aCUCACGGUUgggCGGGCACAAUg -3'
miRNA:   3'- gcGGGUGCCAG---GCCCGUGUUAg -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 220028 0.68 0.920184
Target:  5'- aCGCUCGuggUGGUgCGGGCACAGa- -3'
miRNA:   3'- -GCGGGU---GCCAgGCCCGUGUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 106474 0.68 0.925841
Target:  5'- aCGCUgGugauCGGUCCGGGuCACAcgCa -3'
miRNA:   3'- -GCGGgU----GCCAGGCCC-GUGUuaG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 189308 0.68 0.925841
Target:  5'- aCGCCgC-CGGUCCGGGCccccaccacgcgGCuGUCg -3'
miRNA:   3'- -GCGG-GuGCCAGGCCCG------------UGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 43345 0.67 0.933333
Target:  5'- gCGCCCGCGGUCUGcuauucguccacgauGGaCACcAUCa -3'
miRNA:   3'- -GCGGGUGCCAGGC---------------CC-GUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 232952 0.67 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 197587 0.67 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 150557 0.67 0.936392
Target:  5'- gGCCCACGGgccaaCCGucCACGGUCu -3'
miRNA:   3'- gCGGGUGCCa----GGCccGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 50159 0.67 0.943177
Target:  5'- gCGCCCugGGgCCcuucgugggcaagauGGGCACcGUCu -3'
miRNA:   3'- -GCGGGugCCaGG---------------CCCGUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 113141 0.67 0.943177
Target:  5'- uGCCCcuaaGCGGUggucgccacuaucacCCGGGCACuuuuGAUCg -3'
miRNA:   3'- gCGGG----UGCCA---------------GGCCCGUG----UUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 64248 0.67 0.945935
Target:  5'- gGCCCGCGGgcaCGGGCGu---- -3'
miRNA:   3'- gCGGGUGCCag-GCCCGUguuag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 206573 0.66 0.954484
Target:  5'- gGCCC-CGGUCgCGGGUAguAUg -3'
miRNA:   3'- gCGGGuGCCAG-GCCCGUguUAg -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 78517 0.66 0.954484
Target:  5'- gCGCCgCcCGGacaCCGGGCGCcGUCa -3'
miRNA:   3'- -GCGG-GuGCCa--GGCCCGUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 165722 0.66 0.954484
Target:  5'- gCGCCCguuGGUgaauguuaCCGGGCGCGAUg -3'
miRNA:   3'- -GCGGGug-CCA--------GGCCCGUGUUAg -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 106602 0.66 0.958395
Target:  5'- aGUCCAUcuuUCCGGGCACcAUCg -3'
miRNA:   3'- gCGGGUGcc-AGGCCCGUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 64905 0.66 0.962068
Target:  5'- gGCUaCAUGuGUCCGGGCAUcuUCg -3'
miRNA:   3'- gCGG-GUGC-CAGGCCCGUGuuAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 112266 0.66 0.962068
Target:  5'- uGCUCAUGGaCCGGGUGCGc-- -3'
miRNA:   3'- gCGGGUGCCaGGCCCGUGUuag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 211539 0.66 0.962068
Target:  5'- uGCCCcaACGGUaCGGGCugcagguaaaguGCGAUCa -3'
miRNA:   3'- gCGGG--UGCCAgGCCCG------------UGUUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.