miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 106602 0.66 0.958395
Target:  5'- aGUCCAUcuuUCCGGGCACcAUCg -3'
miRNA:   3'- gCGGGUGcc-AGGCCCGUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 112266 0.66 0.962068
Target:  5'- uGCUCAUGGaCCGGGUGCGc-- -3'
miRNA:   3'- gCGGGUGCCaGGCCCGUGUuag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 113141 0.67 0.943177
Target:  5'- uGCCCcuaaGCGGUggucgccacuaucacCCGGGCACuuuuGAUCg -3'
miRNA:   3'- gCGGG----UGCCA---------------GGCCCGUG----UUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 116028 0.66 0.965511
Target:  5'- aGCCC-CGGgaaggCCuGGCGCAGUUc -3'
miRNA:   3'- gCGGGuGCCa----GGcCCGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 116876 0.66 0.963473
Target:  5'- gGCgUCGCGGUacguuggccguguaCGGGCGCGAUCc -3'
miRNA:   3'- gCG-GGUGCCAg-------------GCCCGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 117977 0.72 0.749627
Target:  5'- gGCCgagCACGG-CCGGGCACGAa- -3'
miRNA:   3'- gCGG---GUGCCaGGCCCGUGUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 136285 0.66 0.968727
Target:  5'- gGCCCGCGGaUCGGccaGCGCuGUCu -3'
miRNA:   3'- gCGGGUGCCaGGCC---CGUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 136374 0.7 0.833426
Target:  5'- cCGCUCGCGGUCaaaaGCGCGAUCg -3'
miRNA:   3'- -GCGGGUGCCAGgcc-CGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 146292 0.68 0.895043
Target:  5'- aGUCCugGGUgugUCGGGCcgcgGCAGUCg -3'
miRNA:   3'- gCGGGugCCA---GGCCCG----UGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 150022 0.69 0.873622
Target:  5'- uGCUCACGGcuugcguggaggUCUGGGCGCGAg- -3'
miRNA:   3'- gCGGGUGCC------------AGGCCCGUGUUag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 150557 0.67 0.936392
Target:  5'- gGCCCACGGgccaaCCGucCACGGUCu -3'
miRNA:   3'- gCGGGUGCCa----GGCccGUGUUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 153640 0.66 0.965511
Target:  5'- gGCCaACGGUCgacgcaGGGCACGcgCg -3'
miRNA:   3'- gCGGgUGCCAGg-----CCCGUGUuaG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 163293 0.66 0.968727
Target:  5'- uCGCCCGCGcUgUGGGCGCugcugGGUCg -3'
miRNA:   3'- -GCGGGUGCcAgGCCCGUG-----UUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 165722 0.66 0.954484
Target:  5'- gCGCCCguuGGUgaauguuaCCGGGCGCGAUg -3'
miRNA:   3'- -GCGGGug-CCA--------GGCCCGUGUUAg -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 166102 0.72 0.749627
Target:  5'- gCGCCCACGGUCUGGccguCAUcGUCg -3'
miRNA:   3'- -GCGGGUGCCAGGCCc---GUGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 176090 0.68 0.895043
Target:  5'- gGCCCACGaUCCGGGUu--AUCu -3'
miRNA:   3'- gCGGGUGCcAGGCCCGuguUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 189308 0.68 0.925841
Target:  5'- aCGCCgC-CGGUCCGGGCccccaccacgcgGCuGUCg -3'
miRNA:   3'- -GCGG-GuGCCAGGCCCG------------UGuUAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 195927 0.7 0.841884
Target:  5'- gCGCCUACGGcgacgCCGGGcCACGgcGUCc -3'
miRNA:   3'- -GCGGGUGCCa----GGCCC-GUGU--UAG- -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 + 195969 0.68 0.901702
Target:  5'- -cCCCGCGGgccgCCGGGCGCc--- -3'
miRNA:   3'- gcGGGUGCCa---GGCCCGUGuuag -5'
MIMAT0001584 hcmv-miR-US33 -53.5 NC_006273.1 - 197587 0.67 0.936392
Target:  5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3'
miRNA:   3'- gCGGGUGCCAGG-----CCCGU-GUUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.