Results 21 - 40 of 48 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 195969 | 0.68 | 0.901702 |
Target: 5'- -cCCCGCGGgccgCCGGGCGCc--- -3' miRNA: 3'- gcGGGUGCCa---GGCCCGUGuuag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 211539 | 0.66 | 0.962068 |
Target: 5'- uGCCCcaACGGUaCGGGCugcagguaaaguGCGAUCa -3' miRNA: 3'- gCGGG--UGCCAgGCCCG------------UGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 220028 | 0.68 | 0.920184 |
Target: 5'- aCGCUCGuggUGGUgCGGGCACAGa- -3' miRNA: 3'- -GCGGGU---GCCAgGCCCGUGUUag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 226519 | 1.03 | 0.011163 |
Target: 5'- gCGCCCACGGUCCGGGCACAAUCa -3' miRNA: 3'- -GCGGGUGCCAGGCCCGUGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | + | 232952 | 0.67 | 0.936392 |
Target: 5'- uGCUCGCGGUCCagcucGGGCAgCAGc- -3' miRNA: 3'- gCGGGUGCCAGG-----CCCGU-GUUag -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 35985 | 0.69 | 0.880999 |
Target: 5'- gCGCCCGagaucUGGgucUCCGGGCACGggCa -3' miRNA: 3'- -GCGGGU-----GCC---AGGCCCGUGUuaG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 41666 | 0.68 | 0.901702 |
Target: 5'- uCGCCCugGGcUCCGacGGCGCcGUUg -3' miRNA: 3'- -GCGGGugCC-AGGC--CCGUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 50159 | 0.67 | 0.943177 |
Target: 5'- gCGCCCugGGgCCcuucgugggcaagauGGGCACcGUCu -3' miRNA: 3'- -GCGGGugCCaGG---------------CCCGUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 61990 | 0.66 | 0.968727 |
Target: 5'- gCGCUCGCGGUCacguccUGGGCAUccaccgcgccGAUCu -3' miRNA: 3'- -GCGGGUGCCAG------GCCCGUG----------UUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 69061 | 0.69 | 0.880999 |
Target: 5'- cCGgCUACGcGUCCGGGUucCAGUCg -3' miRNA: 3'- -GCgGGUGC-CAGGCCCGu-GUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 88836 | 0.66 | 0.965177 |
Target: 5'- gCGCCCAUGG-CCGccacuguGGCGCGugaAUCg -3' miRNA: 3'- -GCGGGUGCCaGGC-------CCGUGU---UAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 90040 | 0.77 | 0.481745 |
Target: 5'- gGCCCgagcgACGGUCUGGGCgGCGGUCg -3' miRNA: 3'- gCGGG-----UGCCAGGCCCG-UGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 95399 | 0.68 | 0.895043 |
Target: 5'- aGCCgCgACGGUUCGGGCGgAGUUu -3' miRNA: 3'- gCGG-G-UGCCAGGCCCGUgUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 106474 | 0.68 | 0.925841 |
Target: 5'- aCGCUgGugauCGGUCCGGGuCACAcgCa -3' miRNA: 3'- -GCGGgU----GCCAGGCCC-GUGUuaG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 106602 | 0.66 | 0.958395 |
Target: 5'- aGUCCAUcuuUCCGGGCACcAUCg -3' miRNA: 3'- gCGGGUGcc-AGGCCCGUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 136285 | 0.66 | 0.968727 |
Target: 5'- gGCCCGCGGaUCGGccaGCGCuGUCu -3' miRNA: 3'- gCGGGUGCCaGGCC---CGUGuUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 136374 | 0.7 | 0.833426 |
Target: 5'- cCGCUCGCGGUCaaaaGCGCGAUCg -3' miRNA: 3'- -GCGGGUGCCAGgcc-CGUGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 146292 | 0.68 | 0.895043 |
Target: 5'- aGUCCugGGUgugUCGGGCcgcgGCAGUCg -3' miRNA: 3'- gCGGGugCCA---GGCCCG----UGUUAG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 153640 | 0.66 | 0.965511 |
Target: 5'- gGCCaACGGUCgacgcaGGGCACGcgCg -3' miRNA: 3'- gCGGgUGCCAGg-----CCCGUGUuaG- -5' |
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MIMAT0001584 | hcmv-miR-US33 | -53.5 | NC_006273.1 | - | 163293 | 0.66 | 0.968727 |
Target: 5'- uCGCCCGCGcUgUGGGCGCugcugGGUCg -3' miRNA: 3'- -GCGGGUGCcAgGCCCGUG-----UUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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