miRNA display CGI


Results 1 - 7 of 7 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0002179 kshv-miR-K12-10a -51.9 NC_003409.1 - 25906 0.66 0.943578
Target:  5'- --gACUUaGGGGGACAGCGCg- -3'
miRNA:   3'- cggUGAGcCCCCCUGUUGUGau -5'
MIMAT0002179 kshv-miR-K12-10a -51.9 NC_003409.1 - 52159 0.66 0.942093
Target:  5'- aGUCGCaCGGGGGGugGccuguggcgugugcGCGCUGg -3'
miRNA:   3'- -CGGUGaGCCCCCCugU--------------UGUGAU- -5'
MIMAT0002179 kshv-miR-K12-10a -51.9 NC_003409.1 + 127711 0.67 0.921697
Target:  5'- uGCUGCUCuuGGGGACGugACUGc -3'
miRNA:   3'- -CGGUGAGccCCCCUGUugUGAU- -5'
MIMAT0002179 kshv-miR-K12-10a -51.9 NC_003409.1 + 70884 0.7 0.751102
Target:  5'- --aGCUUGGGGGGGCAgagaugGCGCUAc -3'
miRNA:   3'- cggUGAGCCCCCCUGU------UGUGAU- -5'
MIMAT0002179 kshv-miR-K12-10a -51.9 NC_003409.1 + 88387 0.7 0.771786
Target:  5'- -gCAUUgGGGGGGACAacagACACUGa -3'
miRNA:   3'- cgGUGAgCCCCCCUGU----UGUGAU- -5'
MIMAT0002179 kshv-miR-K12-10a -51.9 NC_003409.1 - 19292 0.71 0.708343
Target:  5'- cGCCACgUGGGGcGGGCAuACGCUGc -3'
miRNA:   3'- -CGGUGaGCCCC-CCUGU-UGUGAU- -5'
MIMAT0002179 kshv-miR-K12-10a -51.9 NC_003409.1 + 117851 1.01 0.011255
Target:  5'- gGCCACUCGGGGGGACAACACUAa -3'
miRNA:   3'- -CGGUGAGCCCCCCUGUUGUGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.