miRNA display CGI


Results 1 - 10 of 10 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0002180 kshv-miR-K12-10b -53.9 NC_003409.1 + 117851 0.97 0.014665
Target:  5'- gGCCACUCGGGGGGACAACACUAa -3'
miRNA:   3'- -CGGUGAGCCCCCCUGUUGUGGU- -5'
MIMAT0002180 kshv-miR-K12-10b -53.9 NC_003409.1 + 87534 0.68 0.786656
Target:  5'- gGCCGCUUuGGGGGAgCAaucccugugGCGCCAg -3'
miRNA:   3'- -CGGUGAGcCCCCCU-GU---------UGUGGU- -5'
MIMAT0002180 kshv-miR-K12-10b -53.9 NC_003409.1 - 71270 0.68 0.786656
Target:  5'- -aCGCUggcuucccCGGGGGGGCucAACACCAg -3'
miRNA:   3'- cgGUGA--------GCCCCCCUG--UUGUGGU- -5'
MIMAT0002180 kshv-miR-K12-10b -53.9 NC_003409.1 + 100039 0.68 0.786656
Target:  5'- cGUCGCUCuGGuGGGACAGCucCCAa -3'
miRNA:   3'- -CGGUGAGcCC-CCCUGUUGu-GGU- -5'
MIMAT0002180 kshv-miR-K12-10b -53.9 NC_003409.1 - 111127 0.67 0.80597
Target:  5'- cGCC-CUcagucCGGGGGGGCuggAGCGCCGu -3'
miRNA:   3'- -CGGuGA-----GCCCCCCUG---UUGUGGU- -5'
MIMAT0002180 kshv-miR-K12-10b -53.9 NC_003409.1 - 19292 0.67 0.80597
Target:  5'- cGCCACgUGGGGcGGGCAuACGCUg -3'
miRNA:   3'- -CGGUGaGCCCC-CCUGU-UGUGGu -5'
MIMAT0002180 kshv-miR-K12-10b -53.9 NC_003409.1 + 70884 0.67 0.815361
Target:  5'- --aGCUUGGGGGGGCAgagaugGCGCUAc -3'
miRNA:   3'- cggUGAGCCCCCCUGU------UGUGGU- -5'
MIMAT0002180 kshv-miR-K12-10b -53.9 NC_003409.1 + 88387 0.66 0.859262
Target:  5'- -gCAUUgGGGGGGACAACAg-- -3'
miRNA:   3'- cgGUGAgCCCCCCUGUUGUggu -5'
MIMAT0002180 kshv-miR-K12-10b -53.9 NC_003409.1 - 128599 0.66 0.875232
Target:  5'- gGUgACaUUGGGGGGugGGCgACCAg -3'
miRNA:   3'- -CGgUG-AGCCCCCCugUUG-UGGU- -5'
MIMAT0002180 kshv-miR-K12-10b -53.9 NC_003409.1 + 95559 0.66 0.880589
Target:  5'- cGCCGCUgGGGGGcagcuggugacagaGGCAGCGuCCu -3'
miRNA:   3'- -CGGUGAgCCCCC--------------CUGUUGU-GGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.