miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 + 91103 0.65 0.999968
Target:  5'- -gGGAUGCAGGCccuucgaUAGGCAUUc- -3'
miRNA:   3'- agCCUGUGUCCG-------AUUCGUAAuu -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 + 25559 0.66 0.999957
Target:  5'- uUUGGGCACAGGCcaGAGgGUa-- -3'
miRNA:   3'- -AGCCUGUGUCCGa-UUCgUAauu -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 + 42091 0.66 0.999957
Target:  5'- -gGGAUGCGGGU--GGCAUUAu -3'
miRNA:   3'- agCCUGUGUCCGauUCGUAAUu -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 - 18033 0.66 0.99994
Target:  5'- cUCGGGCACcaccGGCUAGuguaugccGCGUUAGc -3'
miRNA:   3'- -AGCCUGUGu---CCGAUU--------CGUAAUU- -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 + 35817 0.67 0.999745
Target:  5'- -gGGACGUGGGCUGGGCGg--- -3'
miRNA:   3'- agCCUGUGUCCGAUUCGUaauu -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 - 75504 0.67 0.999668
Target:  5'- -aGGACAUguguGGGCUGugcugGGCGUUGAa -3'
miRNA:   3'- agCCUGUG----UCCGAU-----UCGUAAUU- -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 + 87389 0.68 0.998904
Target:  5'- cCGGGCGCGGgggcGCUGGGCgGUUGAg -3'
miRNA:   3'- aGCCUGUGUC----CGAUUCG-UAAUU- -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 - 51744 0.68 0.999305
Target:  5'- aCaGAgGCAGGCUAAGCGc--- -3'
miRNA:   3'- aGcCUgUGUCCGAUUCGUaauu -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 - 109150 0.71 0.991582
Target:  5'- -gGGACGCAGGCcGGGCGc--- -3'
miRNA:   3'- agCCUGUGUCCGaUUCGUaauu -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 - 117388 0.71 0.98929
Target:  5'- -gGGugACAGGCUAcaugugagguuauagGGCGUUGAc -3'
miRNA:   3'- agCCugUGUCCGAU---------------UCGUAAUU- -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 - 14341 0.72 0.984976
Target:  5'- cUCGGAgCGCAGGCUAccuggGGCGUc-- -3'
miRNA:   3'- -AGCCU-GUGUCCGAU-----UCGUAauu -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 + 12719 0.75 0.918182
Target:  5'- cUGGACACAguGGCUAAGCAa--- -3'
miRNA:   3'- aGCCUGUGU--CCGAUUCGUaauu -5'
MIMAT0002181 kshv-miR-K12-11 -44.1 NC_003409.1 + 120459 1.02 0.057254
Target:  5'- aUCGGACACAGGCUAAGCAUUAAg -3'
miRNA:   3'- -AGCCUGUGUCCGAUUCGUAAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.