miRNA display CGI


Results 1 - 5 of 5 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0002183 kshv-miR-K12-2 -46.9 NC_003409.1 - 49331 0.66 0.998382
Target:  5'- gCGGugcaugUGACCCGGcCUGCGGUc -3'
miRNA:   3'- -GUCua----GCUGGGCCuGAUGUCAa -5'
MIMAT0002183 kshv-miR-K12-2 -46.9 NC_003409.1 + 42546 0.69 0.984441
Target:  5'- aAGGUgGGCUCGGGCUGCAu-- -3'
miRNA:   3'- gUCUAgCUGGGCCUGAUGUcaa -5'
MIMAT0002183 kshv-miR-K12-2 -46.9 NC_003409.1 - 115664 0.69 0.989632
Target:  5'- gCAGAaugUGGCCCGGGCUAguucCGGUa -3'
miRNA:   3'- -GUCUa--GCUGGGCCUGAU----GUCAa -5'
MIMAT0002183 kshv-miR-K12-2 -46.9 NC_003409.1 - 115803 0.7 0.977478
Target:  5'- gGGAUgCGACCaCGGAUUugAGUUc -3'
miRNA:   3'- gUCUA-GCUGG-GCCUGAugUCAA- -5'
MIMAT0002183 kshv-miR-K12-2 -46.9 NC_003409.1 + 121607 1.01 0.038966
Target:  5'- uCAGAUCGACCCGGACUACAGUUa -3'
miRNA:   3'- -GUCUAGCUGGGCCUGAUGUCAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.