miRNA display CGI


Results 1 - 11 of 11 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0002184 kshv-miR-K12-9* -51.7 NC_003409.1 + 119218 1.01 0.010957
Target:  5'- cAGCGGGGUUUACGCAGCUGGGUa -3'
miRNA:   3'- -UCGCCCCAAAUGCGUCGACCCA- -5'
MIMAT0002184 kshv-miR-K12-9* -51.7 NC_003409.1 + 119176 0.76 0.453089
Target:  5'- cAGCcGGGUUUACGCAGCUGcGUa -3'
miRNA:   3'- -UCGcCCCAAAUGCGUCGACcCA- -5'
MIMAT0002184 kshv-miR-K12-9* -51.7 NC_003409.1 - 75465 0.72 0.691497
Target:  5'- gAGgGGGGUguuauagGgGCGGCUGGGa -3'
miRNA:   3'- -UCgCCCCAaa-----UgCGUCGACCCa -5'
MIMAT0002184 kshv-miR-K12-9* -51.7 NC_003409.1 - 23817 0.7 0.756033
Target:  5'- cAGCuGGGUaUACcCAGCUGGGUu -3'
miRNA:   3'- -UCGcCCCAaAUGcGUCGACCCA- -5'
MIMAT0002184 kshv-miR-K12-9* -51.7 NC_003409.1 - 119346 0.7 0.776632
Target:  5'- cAGCuGGGUaUACGCAGCUGcGUa -3'
miRNA:   3'- -UCGcCCCAaAUGCGUCGACcCA- -5'
MIMAT0002184 kshv-miR-K12-9* -51.7 NC_003409.1 + 132690 0.68 0.860452
Target:  5'- cGGgGGGGUggACGaCGGCUGGu- -3'
miRNA:   3'- -UCgCCCCAaaUGC-GUCGACCca -5'
MIMAT0002184 kshv-miR-K12-9* -51.7 NC_003409.1 - 132114 0.68 0.868662
Target:  5'- cGGUGGuGUUUAC-CAGCUGGGc -3'
miRNA:   3'- -UCGCCcCAAAUGcGUCGACCCa -5'
MIMAT0002184 kshv-miR-K12-9* -51.7 NC_003409.1 - 130924 0.68 0.876621
Target:  5'- uGCGGGGgacggUGCugccCAGCUGGGc -3'
miRNA:   3'- uCGCCCCaa---AUGc---GUCGACCCa -5'
MIMAT0002184 kshv-miR-K12-9* -51.7 NC_003409.1 - 74365 0.66 0.936019
Target:  5'- uGGCGGGGguaacgACaGUAGCgGGGg -3'
miRNA:   3'- -UCGCCCCaaa---UG-CGUCGaCCCa -5'
MIMAT0002184 kshv-miR-K12-9* -51.7 NC_003409.1 + 87394 0.66 0.950759
Target:  5'- cGCGGGGgcgcUGgGCGGUUGaGGUu -3'
miRNA:   3'- uCGCCCCaa--AUgCGUCGAC-CCA- -5'
MIMAT0002184 kshv-miR-K12-9* -51.7 NC_003409.1 + 17922 0.66 0.950759
Target:  5'- gGGCGGGGU---CGCGGgUcGGGg -3'
miRNA:   3'- -UCGCCCCAaauGCGUCgA-CCCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.