Results 21 - 28 of 28 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | - | 130917 | 0.68 | 0.992032 |
Target: 5'- -gACGguGCUGCccagcuggGCCCAGg -3' miRNA: 3'- aaUGCguCGACGcaua----UGGGUC- -5' |
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MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | - | 114379 | 0.67 | 0.993175 |
Target: 5'- -aAUGCAGCacgguUGCGUGUACCa-- -3' miRNA: 3'- aaUGCGUCG-----ACGCAUAUGGguc -5' |
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MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | - | 115413 | 0.67 | 0.994184 |
Target: 5'- --gUGCAGCUGCaagucgAUACCCAu -3' miRNA: 3'- aauGCGUCGACGca----UAUGGGUc -5' |
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MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 19118 | 0.67 | 0.995068 |
Target: 5'- -cGCGUguuuacAGCaGCGUAUGCCCGc -3' miRNA: 3'- aaUGCG------UCGaCGCAUAUGGGUc -5' |
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MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 47330 | 0.67 | 0.995068 |
Target: 5'- cUGCaGCAGCUGUugGUGUACCaCAu -3' miRNA: 3'- aAUG-CGUCGACG--CAUAUGG-GUc -5' |
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MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | - | 34514 | 0.66 | 0.997089 |
Target: 5'- cUGCGCGGCgaGCucAUGCCCAc -3' miRNA: 3'- aAUGCGUCGa-CGcaUAUGGGUc -5' |
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MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 87921 | 0.66 | 0.998673 |
Target: 5'- gUGCuGCGGCUuggGCGgcgccGUGCCCGGu -3' miRNA: 3'- aAUG-CGUCGA---CGCa----UAUGGGUC- -5' |
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MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 55152 | 0.66 | 0.998673 |
Target: 5'- ---aGCAGCacUGCGguUACCCGGg -3' miRNA: 3'- aaugCGUCG--ACGCauAUGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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