Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 26365 | 0.73 | 0.896306 |
|
Target: 5'- -gGCGCAGggGUGUAUGCCCu- -3' miRNA: 3'- aaUGCGUCgaCGCAUAUGGGuc -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 120311 | 0.75 | 0.798462 |
|
Target: 5'- aUGCGCGGCUGCGUGguauCUCAu -3' miRNA: 3'- aAUGCGUCGACGCAUau--GGGUc -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | - | 18219 | 0.76 | 0.767096 |
|
Target: 5'- -aGCuuGGCUGCGUAUGCCCGc -3' miRNA: 3'- aaUGcgUCGACGCAUAUGGGUc -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 23658 | 0.76 | 0.734341 |
|
Target: 5'- -aACcCAGCUGgGUAUACCCAGc -3' miRNA: 3'- aaUGcGUCGACgCAUAUGGGUC- -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | - | 23820 | 0.82 | 0.421873 |
|
Target: 5'- --uUGCAGCUGgGUAUACCCAGc -3' miRNA: 3'- aauGCGUCGACgCAUAUGGGUC- -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 119226 | 0.84 | 0.355563 |
|
Target: 5'- uUUACGCAGCUGgGUAgACCCAGc -3' miRNA: 3'- -AAUGCGUCGACgCAUaUGGGUC- -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | - | 119337 | 0.9 | 0.15678 |
|
Target: 5'- aUACGCAGCUGCGUAaACCCGGc -3' miRNA: 3'- aAUGCGUCGACGCAUaUGGGUC- -5' |
|||||||
| MIMAT0002185 | kshv-miR-K12-9 | -46.8 | NC_003409.1 | + | 119184 | 1.01 | 0.036813 |
|
Target: 5'- uUUACGCAGCUGCGUAUACCCAGc -3' miRNA: 3'- -AAUGCGUCGACGCAUAUGGGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home