Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0002187 | kshv-miR-K12-7 | -47.3 | NC_003409.1 | - | 132462 | 0.79 | 0.51292 |
Target: 5'- cAGUGCCAGCGugGaGGGGUCAg -3' miRNA: 3'- -UCGCGGUCGUugUaCCCUAGU- -5' |
|||||||
MIMAT0002187 | kshv-miR-K12-7 | -47.3 | NC_003409.1 | + | 132672 | 0.68 | 0.978813 |
Target: 5'- cAGCGCCAGCcaggggGACGggGGGGUgGa -3' miRNA: 3'- -UCGCGGUCG------UUGUa-CCCUAgU- -5' |
|||||||
MIMAT0002187 | kshv-miR-K12-7 | -47.3 | NC_003409.1 | - | 133751 | 0.66 | 0.994961 |
Target: 5'- uGUGCCAGacaGGCGUucGGGAUCc -3' miRNA: 3'- uCGCGGUCg--UUGUA--CCCUAGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home