Results 21 - 23 of 23 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0002187 | kshv-miR-K12-7 | -47.3 | NC_003409.1 | + | 113441 | 0.73 | 0.844375 |
Target: 5'- uGCGCCAGCGACG-GGcGGUCc -3' miRNA: 3'- uCGCGGUCGUUGUaCC-CUAGu -5' |
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MIMAT0002187 | kshv-miR-K12-7 | -47.3 | NC_003409.1 | - | 132462 | 0.79 | 0.51292 |
Target: 5'- cAGUGCCAGCGugGaGGGGUCAg -3' miRNA: 3'- -UCGCGGUCGUugUaCCCUAGU- -5' |
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MIMAT0002187 | kshv-miR-K12-7 | -47.3 | NC_003409.1 | + | 120239 | 1.02 | 0.025528 |
Target: 5'- gAGCGCCAGCAACAUGGGAUCAu -3' miRNA: 3'- -UCGCGGUCGUUGUACCCUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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