miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 87594 0.67 0.999488
Target:  5'- uCCUcAGGGUGCUGCGaGUg-AGCg -3'
miRNA:   3'- -GGA-UCUCAUGACGC-CAaaUCGa -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 + 126748 0.68 0.998086
Target:  5'- cUCUGGAG-ACUGCGuGggUGGCa -3'
miRNA:   3'- -GGAUCUCaUGACGC-CaaAUCGa -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24441 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24721 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24701 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24681 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24661 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24641 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24621 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24601 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24581 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24561 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24541 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24521 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24501 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24481 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24461 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 - 24421 0.7 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
MIMAT0002191 kshv-miR-K12-4-5p -45.2 NC_003409.1 + 121333 1.02 0.046566
Target:  5'- cCCUAGAGUACUGCGGUUUAGCUa -3'
miRNA:   3'- -GGAUCUCAUGACGCCAAAUCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.