miRNA display CGI


Results 1 - 4 of 4 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0002192 kshv-miR-K12-4-3p -45.5 NC_003409.1 + 121295 1.01 0.040964
Target:  5'- aUCAGCUAGGCCUCAGUAUUCUAu -3'
miRNA:   3'- -AGUCGAUCCGGAGUCAUAAGAU- -5'
MIMAT0002192 kshv-miR-K12-4-3p -45.5 NC_003409.1 + 113579 0.71 0.966299
Target:  5'- gUCAGCUGGGCCUCAu------- -3'
miRNA:   3'- -AGUCGAUCCGGAGUcauaagau -5'
MIMAT0002192 kshv-miR-K12-4-3p -45.5 NC_003409.1 - 60768 0.67 0.998044
Target:  5'- -aGGCUAguGGUCUgGGUGUUCUGa -3'
miRNA:   3'- agUCGAU--CCGGAgUCAUAAGAU- -5'
MIMAT0002192 kshv-miR-K12-4-3p -45.5 NC_003409.1 - 101412 0.66 0.999593
Target:  5'- gCAGUUGGGCaaCAGUAUUUa- -3'
miRNA:   3'- aGUCGAUCCGgaGUCAUAAGau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.