miRNA display CGI


Results 1 - 20 of 55 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 32152 0.66 0.993118
Target:  5'- gUCgGGAC-AGGCCaGcAGACGCAg -3'
miRNA:   3'- -AGaCCUGcUCCGG-C-UCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 33925 0.69 0.945426
Target:  5'- cCUGGACGGGGCCacgucgccggcuguGAgGugGCGg -3'
miRNA:   3'- aGACCUGCUCCGG--------------CU-CugCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 35521 0.69 0.951268
Target:  5'- gCUGGuuaaGuuGGCCGAGACGCu -3'
miRNA:   3'- aGACCug--Cu-CCGGCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 35667 0.66 0.988048
Target:  5'- -gUGGcCGAGGCCGAcGAgGCc -3'
miRNA:   3'- agACCuGCUCCGGCU-CUgCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 37208 0.66 0.992051
Target:  5'- gUUUGcGACGcGGCCGAcGCGCGu -3'
miRNA:   3'- -AGAC-CUGCuCCGGCUcUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 38457 0.67 0.982636
Target:  5'- cUCcGGAUGAgcGGCCGcGGCGCGg -3'
miRNA:   3'- -AGaCCUGCU--CCGGCuCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 46900 0.79 0.477911
Target:  5'- gCUGGGgugcgcgcgucuccCGAGGCCGAGGCGCGc -3'
miRNA:   3'- aGACCU--------------GCUCCGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 51531 0.72 0.865001
Target:  5'- cUCUcGACgGAGGCCGGGACGaCAg -3'
miRNA:   3'- -AGAcCUG-CUCCGGCUCUGC-GU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 52619 0.93 0.076016
Target:  5'- gCUGGACGAGGCCGAGugGCGa -3'
miRNA:   3'- aGACCUGCUCCGGCUCugCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 53010 0.67 0.978116
Target:  5'- cUUGGcCGAGGCCGGGGaggagaGCGu -3'
miRNA:   3'- aGACCuGCUCCGGCUCUg-----CGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 63754 0.72 0.840153
Target:  5'- gUCUGGcGCGuGGCCG-GGCGCGc -3'
miRNA:   3'- -AGACC-UGCuCCGGCuCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 65174 0.66 0.990075
Target:  5'- gCUGGAUguggcgaccguaccaGAGGCUGAGAuCGCc -3'
miRNA:   3'- aGACCUG---------------CUCCGGCUCU-GCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 72292 0.67 0.980473
Target:  5'- gCUGccGAUGAGGCCGccGCGCAg -3'
miRNA:   3'- aGAC--CUGCUCCGGCucUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 75344 0.68 0.969789
Target:  5'- -gUGGACGGGGCCGGGcUGg- -3'
miRNA:   3'- agACCUGCUCCGGCUCuGCgu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 77033 0.68 0.966567
Target:  5'- cCUGGACGuGGUgGGGGUGCAg -3'
miRNA:   3'- aGACCUGCuCCGgCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 78006 0.66 0.992051
Target:  5'- aUCUuGACGcugcuGGCCGAGACgGCGu -3'
miRNA:   3'- -AGAcCUGCu----CCGGCUCUG-CGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 82811 0.71 0.901664
Target:  5'- gUCUGGACGAccucaugagcGGCCuGGGCGCc -3'
miRNA:   3'- -AGACCUGCU----------CCGGcUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 86401 0.66 0.992051
Target:  5'- gUUGGACGGGGagGAG-CGCAu -3'
miRNA:   3'- aGACCUGCUCCggCUCuGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 90027 0.67 0.986413
Target:  5'- gUCUGGGCGGcGGUCGuGGugGUg -3'
miRNA:   3'- -AGACCUGCU-CCGGC-UCugCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 94366 0.66 0.989385
Target:  5'- cCUGGAgcaccaucCGGGGCCGugggccgggcaccGGGCGCGg -3'
miRNA:   3'- aGACCU--------GCUCCGGC-------------UCUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.