miRNA display CGI


Results 21 - 40 of 55 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 227391 0.67 0.982636
Target:  5'- --gGGACGAGaGCCGGuagggcagcGGCGCAu -3'
miRNA:   3'- agaCCUGCUC-CGGCU---------CUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 103091 0.67 0.982636
Target:  5'- -gUGGACGcGGCCGGcGCGCc -3'
miRNA:   3'- agACCUGCuCCGGCUcUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 130999 0.67 0.980473
Target:  5'- --aGGAgGAGGaaGAGACGCu -3'
miRNA:   3'- agaCCUgCUCCggCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 72292 0.67 0.980473
Target:  5'- gCUGccGAUGAGGCCGccGCGCAg -3'
miRNA:   3'- aGAC--CUGCUCCGGCucUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 103406 0.67 0.978116
Target:  5'- uUCUcGGACGAGGCCcugaccGAGAcCGUg -3'
miRNA:   3'- -AGA-CCUGCUCCGG------CUCU-GCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 213956 0.67 0.978116
Target:  5'- gCUGGAaggcgaCGAGGaCgGAGGCGCGc -3'
miRNA:   3'- aGACCU------GCUCC-GgCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 53010 0.67 0.978116
Target:  5'- cUUGGcCGAGGCCGGGGaggagaGCGu -3'
miRNA:   3'- aGACCuGCUCCGGCUCUg-----CGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 227411 0.67 0.978116
Target:  5'- --cGGugG-GGCCGGGACGgGg -3'
miRNA:   3'- agaCCugCuCCGGCUCUGCgU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 75344 0.68 0.969789
Target:  5'- -gUGGACGGGGCCGGGcUGg- -3'
miRNA:   3'- agACCUGCUCCGGCUCuGCgu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 162362 0.68 0.969789
Target:  5'- -gUGGugGAGGCgGcGGCGCu -3'
miRNA:   3'- agACCugCUCCGgCuCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 153359 0.68 0.966567
Target:  5'- cUUGGGCGuGGGCCGcGGCGUg -3'
miRNA:   3'- aGACCUGC-UCCGGCuCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 77033 0.68 0.966567
Target:  5'- cCUGGACGuGGUgGGGGUGCAg -3'
miRNA:   3'- aGACCUGCuCCGgCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 171882 0.68 0.963111
Target:  5'- gCUGGugGGGGUCGgcuuguuaagagGGGCGCu -3'
miRNA:   3'- aGACCugCUCCGGC------------UCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 95088 0.69 0.955466
Target:  5'- cCUGGGCGuuGGCCGGucccguGACGCu -3'
miRNA:   3'- aGACCUGCu-CCGGCU------CUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 143369 0.69 0.955466
Target:  5'- gUCUGGACGAGGugcgcauggguaCgGAGGCGUu -3'
miRNA:   3'- -AGACCUGCUCC------------GgCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 35521 0.69 0.951268
Target:  5'- gCUGGuuaaGuuGGCCGAGACGCu -3'
miRNA:   3'- aGACCug--Cu-CCGGCUCUGCGu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 33925 0.69 0.945426
Target:  5'- cCUGGACGGGGCCacgucgccggcuguGAgGugGCGg -3'
miRNA:   3'- aGACCUGCUCCGG--------------CU-CugCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 133223 0.69 0.942097
Target:  5'- gUUGGACGAGGaCGAGAUGg- -3'
miRNA:   3'- aGACCUGCUCCgGCUCUGCgu -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 + 197269 0.7 0.931874
Target:  5'- gCUGGGCGcgcuGGcGCUGGGGCGCGa -3'
miRNA:   3'- aGACCUGC----UC-CGGCUCUGCGU- -5'
MIMAT0003342 hcmv-miR-UL70-5p -50.8 NC_006273.1 - 233270 0.7 0.931874
Target:  5'- gCUGGGCGcgcuGGcGCUGGGGCGCGa -3'
miRNA:   3'- aGACCUGC----UC-CGGCUCUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.