Results 1 - 20 of 180 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 143164 | 0.66 | 0.931859 |
Target: 5'- aCgGCGCGCCG---CAUCCCCa -3' miRNA: 3'- -GgCGCGCGGUcggGUAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 94654 | 0.66 | 0.931859 |
Target: 5'- uCCGCGC-CCuuCCCcUCCCCc -3' miRNA: 3'- -GGCGCGcGGucGGGuAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 64224 | 0.66 | 0.931859 |
Target: 5'- aUCGCGCGCUAGCgCCGaugaCCUg -3' miRNA: 3'- -GGCGCGCGGUCG-GGUag--GGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 45403 | 0.66 | 0.937047 |
Target: 5'- uCCGCuGcCGCCugcAGCCCAgUCUCCg -3' miRNA: 3'- -GGCG-C-GCGG---UCGGGU-AGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 47502 | 0.66 | 0.951063 |
Target: 5'- gCCGCGCGaggcCCAGCUCgAUCUCg -3' miRNA: 3'- -GGCGCGC----GGUCGGG-UAGGGg -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 56574 | 0.66 | 0.946647 |
Target: 5'- gCCGC-CGCC-GCCCgAUCCaCCu -3' miRNA: 3'- -GGCGcGCGGuCGGG-UAGG-GG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 78367 | 0.66 | 0.941976 |
Target: 5'- uCCGCGCccucuucuuuGCCGGCUC-UCCUCc -3' miRNA: 3'- -GGCGCG----------CGGUCGGGuAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 57860 | 0.66 | 0.946647 |
Target: 5'- gCCGCGCcgaGCCAGCggGcCCCCg -3' miRNA: 3'- -GGCGCG---CGGUCGggUaGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 58082 | 0.66 | 0.941976 |
Target: 5'- aCUGCGuCGCCuuGCCC-UCCUCc -3' miRNA: 3'- -GGCGC-GCGGu-CGGGuAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 38390 | 0.66 | 0.941976 |
Target: 5'- aCCGC-CGCC-GUCCGUCgCCg -3' miRNA: 3'- -GGCGcGCGGuCGGGUAGgGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 148556 | 0.66 | 0.941976 |
Target: 5'- aCGgGCGCC-GCCCGUUCUUu -3' miRNA: 3'- gGCgCGCGGuCGGGUAGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 144167 | 0.66 | 0.946647 |
Target: 5'- cUCGCGCGCCGagaucGCCgAggCCCUg -3' miRNA: 3'- -GGCGCGCGGU-----CGGgUa-GGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 76723 | 0.66 | 0.931859 |
Target: 5'- cCCGCaguGCGCCGGCaaCAUCCgCg -3' miRNA: 3'- -GGCG---CGCGGUCGg-GUAGGgG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 94398 | 0.66 | 0.931859 |
Target: 5'- aCCGgGCG-CGGCCCG-CUCCg -3' miRNA: 3'- -GGCgCGCgGUCGGGUaGGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 31079 | 0.66 | 0.931859 |
Target: 5'- uUCGCGCucaCCAGCCuCGUcgaCCCCg -3' miRNA: 3'- -GGCGCGc--GGUCGG-GUA---GGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 71115 | 0.66 | 0.946647 |
Target: 5'- cCCgGCGcCGCCAGCaCCAguuucgCCUCg -3' miRNA: 3'- -GG-CGC-GCGGUCG-GGUa-----GGGG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 115933 | 0.66 | 0.951063 |
Target: 5'- -aGCGCGUCAGCa-GUCCgCCg -3' miRNA: 3'- ggCGCGCGGUCGggUAGG-GG- -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 103777 | 0.66 | 0.951063 |
Target: 5'- aCCGCGCGCguGCCaggCCg- -3' miRNA: 3'- -GGCGCGCGguCGGguaGGgg -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 124838 | 0.66 | 0.931859 |
Target: 5'- cUCGCGCGCCAG-CgGUCCg- -3' miRNA: 3'- -GGCGCGCGGUCgGgUAGGgg -5' |
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MIMAT0003343 | hcmv-miR-UL70-3p | -53.7 | NC_006273.1 | + | 34102 | 0.66 | 0.951063 |
Target: 5'- aCCGcCGuCGUCGcGCCCGUCgCCg -3' miRNA: 3'- -GGC-GC-GCGGU-CGGGUAGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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