miRNA display CGI


Results 1 - 20 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 169 0.67 0.92641
Target:  5'- aCGCGCGUCuguGUCUguuugaGUCCCCa -3'
miRNA:   3'- gGCGCGCGGu--CGGG------UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 1101 0.69 0.841368
Target:  5'- cCCGaGCGCCcgcaacacCCCGUCCCCg -3'
miRNA:   3'- -GGCgCGCGGuc------GGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 1220 0.66 0.951063
Target:  5'- aCCG-GCGCCGgcGCCCAgcacgCCCg -3'
miRNA:   3'- -GGCgCGCGGU--CGGGUa----GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 1346 0.69 0.823993
Target:  5'- cCCGCGaCGC---CCCGUCCCCg -3'
miRNA:   3'- -GGCGC-GCGgucGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 1431 0.66 0.941976
Target:  5'- cCCGcCGCGaaauGCCCcuGUCCCCg -3'
miRNA:   3'- -GGC-GCGCggu-CGGG--UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 1520 0.7 0.796526
Target:  5'- uCCGcCGCGaaaGGCCCccGUCCCCg -3'
miRNA:   3'- -GGC-GCGCgg-UCGGG--UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 1679 0.69 0.849749
Target:  5'- gCGCaGCGCuCGGCuaccCCGUCCCCc -3'
miRNA:   3'- gGCG-CGCG-GUCG----GGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 1985 0.67 0.902017
Target:  5'- uUGCGCuGUCGGCCCAgucgCCaCCg -3'
miRNA:   3'- gGCGCG-CGGUCGGGUa---GG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 4395 0.67 0.914731
Target:  5'- cCCGUGU-CCGGUCCugauUCCCCg -3'
miRNA:   3'- -GGCGCGcGGUCGGGu---AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 8646 0.71 0.716909
Target:  5'- uUCGCGcCGCCGGUCCc-CCCCa -3'
miRNA:   3'- -GGCGC-GCGGUCGGGuaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 21812 0.7 0.787033
Target:  5'- gCCGCuGCGCCGcGCCgcCGUCCUCg -3'
miRNA:   3'- -GGCG-CGCGGU-CGG--GUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 22336 0.68 0.887574
Target:  5'- gCCGCGacuccgaCGUCGGuCCCAUCgCCCa -3'
miRNA:   3'- -GGCGC-------GCGGUC-GGGUAG-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 29704 0.67 0.92641
Target:  5'- aCuuGCGCUGGCCCGucgaccuuaUCCCCa -3'
miRNA:   3'- gGcgCGCGGUCGGGU---------AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 31017 0.72 0.68546
Target:  5'- aCCGC-CGCCGGCgCCGUUCUCg -3'
miRNA:   3'- -GGCGcGCGGUCG-GGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 31079 0.66 0.931859
Target:  5'- uUCGCGCucaCCAGCCuCGUcgaCCCCg -3'
miRNA:   3'- -GGCGCGc--GGUCGG-GUA---GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 31894 0.69 0.841368
Target:  5'- cCUGCGUcuGCUGGCCUGUCCCg -3'
miRNA:   3'- -GGCGCG--CGGUCGGGUAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 32004 0.71 0.727248
Target:  5'- cCCGCGCGCCA-CCCA-CCUg -3'
miRNA:   3'- -GGCGCGCGGUcGGGUaGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 33075 0.68 0.888287
Target:  5'- gUGCGCGCCuGCUCGUCaucgCCg -3'
miRNA:   3'- gGCGCGCGGuCGGGUAGg---GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 33352 0.73 0.609779
Target:  5'- gCCGCGUGCgauccugCGGCgCGUCCCCg -3'
miRNA:   3'- -GGCGCGCG-------GUCGgGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 33679 0.66 0.946647
Target:  5'- gUCGCGCGCC-GCCgAcgCCCg -3'
miRNA:   3'- -GGCGCGCGGuCGGgUa-GGGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.