miRNA display CGI


Results 21 - 40 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197428 0.66 0.946647
Target:  5'- aCgGCGC-CCAGCUCGUCCa- -3'
miRNA:   3'- -GgCGCGcGGUCGGGUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 191541 0.66 0.946647
Target:  5'- cCCGUGCuuaCAGCCU-UCCCCu -3'
miRNA:   3'- -GGCGCGcg-GUCGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233008 0.66 0.946647
Target:  5'- cUCGCGCcCCAGCgCCAgcgCgCCCa -3'
miRNA:   3'- -GGCGCGcGGUCG-GGUa--G-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 95760 0.66 0.946647
Target:  5'- gCC-CGUGCCGGgaCCC-UCCCCg -3'
miRNA:   3'- -GGcGCGCGGUC--GGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 187426 0.66 0.946647
Target:  5'- cCCGCGCGgCGGUCUguuAUCCgCg -3'
miRNA:   3'- -GGCGCGCgGUCGGG---UAGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197531 0.66 0.946647
Target:  5'- cUCGCGCcCCAGCgCCAgcgCgCCCa -3'
miRNA:   3'- -GGCGCGcGGUCG-GGUa--G-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 144167 0.66 0.946647
Target:  5'- cUCGCGCGCCGagaucGCCgAggCCCUg -3'
miRNA:   3'- -GGCGCGCGGU-----CGGgUa-GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 38397 0.66 0.946191
Target:  5'- aCCGCGUcggccucGCCGGCCCGagcgCgCCg -3'
miRNA:   3'- -GGCGCG-------CGGUCGGGUa---GgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 143074 0.66 0.941976
Target:  5'- aCCGCgGUGCaC-GCCCGUgCCCa -3'
miRNA:   3'- -GGCG-CGCG-GuCGGGUAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 197393 0.66 0.941976
Target:  5'- -gGCGCG-CGGCaCgGUCCCCg -3'
miRNA:   3'- ggCGCGCgGUCG-GgUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 1431 0.66 0.941976
Target:  5'- cCCGcCGCGaaauGCCCcuGUCCCCg -3'
miRNA:   3'- -GGC-GCGCggu-CGGG--UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 148556 0.66 0.941976
Target:  5'- aCGgGCGCC-GCCCGUUCUUu -3'
miRNA:   3'- gGCgCGCGGuCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 38390 0.66 0.941976
Target:  5'- aCCGC-CGCC-GUCCGUCgCCg -3'
miRNA:   3'- -GGCGcGCGGuCGGGUAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233146 0.66 0.941976
Target:  5'- -gGCGCG-CGGCaCgGUCCCCg -3'
miRNA:   3'- ggCGCGCgGUCG-GgUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 174774 0.66 0.941976
Target:  5'- uCCGCGUuCCAauGCaCCGUUCCCg -3'
miRNA:   3'- -GGCGCGcGGU--CG-GGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 164708 0.66 0.941976
Target:  5'- gCCGCGCGCCcuCCaCcgCCgCCa -3'
miRNA:   3'- -GGCGCGCGGucGG-GuaGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 58082 0.66 0.941976
Target:  5'- aCUGCGuCGCCuuGCCC-UCCUCc -3'
miRNA:   3'- -GGCGC-GCGGu-CGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 221379 0.66 0.941976
Target:  5'- cCCGCucCGCCAccccgcGCCCG-CCCCa -3'
miRNA:   3'- -GGCGc-GCGGU------CGGGUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 78367 0.66 0.941976
Target:  5'- uCCGCGCccucuucuuuGCCGGCUC-UCCUCc -3'
miRNA:   3'- -GGCGCG----------CGGUCGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 40087 0.66 0.941976
Target:  5'- gCCGcCGCGCCAcacGCUgAgCCCCg -3'
miRNA:   3'- -GGC-GCGCGGU---CGGgUaGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.