Results 1 - 10 of 10 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| MIMAT0003390 | ebv-miR-BART1-3p | -48 | NC_007605.1 | - | 165521 | 0.67 | 0.995307 |
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Target: 5'- uGGACGUGG-GGAUGGggaaaugcauucaCGGUGCa- -3' miRNA: 3'- -UCUGUAUCaCCUAUC-------------GCCACGau -5' |
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| MIMAT0003390 | ebv-miR-BART1-3p | -48 | NC_007605.1 | + | 158604 | 0.66 | 0.997253 |
|
Target: 5'- --cCGUGGUGGcgGGgGGUGCg- -3' miRNA: 3'- ucuGUAUCACCuaUCgCCACGau -5' |
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| MIMAT0003390 | ebv-miR-BART1-3p | -48 | NC_007605.1 | - | 156188 | 0.67 | 0.995384 |
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Target: 5'- cAGGgGUGGUGGAUGuGCGGggGCc- -3' miRNA: 3'- -UCUgUAUCACCUAU-CGCCa-CGau -5' |
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| MIMAT0003390 | ebv-miR-BART1-3p | -48 | NC_007605.1 | - | 139442 | 1.02 | 0.031401 |
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Target: 5'- gAGACAUAGUGGAUAGCGGUGCUAu -3' miRNA: 3'- -UCUGUAUCACCUAUCGCCACGAU- -5' |
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| MIMAT0003390 | ebv-miR-BART1-3p | -48 | NC_007605.1 | + | 133610 | 0.73 | 0.890052 |
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Target: 5'- uGACAgaAGUGG-UGGCGGUGCUu -3' miRNA: 3'- uCUGUa-UCACCuAUCGCCACGAu -5' |
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| MIMAT0003390 | ebv-miR-BART1-3p | -48 | NC_007605.1 | - | 119344 | 0.68 | 0.991406 |
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Target: 5'- gGGuCAUGGUGGAUuugaGGCGGcUGCc- -3' miRNA: 3'- -UCuGUAUCACCUA----UCGCC-ACGau -5' |
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| MIMAT0003390 | ebv-miR-BART1-3p | -48 | NC_007605.1 | - | 114314 | 0.7 | 0.962773 |
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Target: 5'- cAGAUGcAGUGGGUgaGGCGGUGCc- -3' miRNA: 3'- -UCUGUaUCACCUA--UCGCCACGau -5' |
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| MIMAT0003390 | ebv-miR-BART1-3p | -48 | NC_007605.1 | - | 108885 | 0.73 | 0.874601 |
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Target: 5'- uGGACGccucGGUGGAgauucccgUGGCGGUGCUGg -3' miRNA: 3'- -UCUGUa---UCACCU--------AUCGCCACGAU- -5' |
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| MIMAT0003390 | ebv-miR-BART1-3p | -48 | NC_007605.1 | + | 66407 | 0.68 | 0.988591 |
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Target: 5'- gGGACcaGGUGGGUGGUGuGUGCc- -3' miRNA: 3'- -UCUGuaUCACCUAUCGC-CACGau -5' |
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| MIMAT0003390 | ebv-miR-BART1-3p | -48 | NC_007605.1 | - | 36560 | 0.69 | 0.983088 |
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Target: 5'- gGGugGUGGUGGGgggGGUGGUGg-- -3' miRNA: 3'- -UCugUAUCACCUa--UCGCCACgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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