miRNA display CGI


Results 1 - 15 of 15 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 + 2868 0.69 0.99998
Target:  5'- aAGCACcaGGCACuUGACACUgugAGGUa -3'
miRNA:   3'- -UCGUG--UUGUG-AUUGUGA---UCCAa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 - 5031 0.67 0.999999
Target:  5'- uAGCACGGCcacCUGACAUcgUGGGUc -3'
miRNA:   3'- -UCGUGUUGu--GAUUGUG--AUCCAa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 + 65318 0.66 1
Target:  5'- gGGCACAGCggGCcGACACgcagGGGg- -3'
miRNA:   3'- -UCGUGUUG--UGaUUGUGa---UCCaa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 + 78423 0.67 0.999999
Target:  5'- aGGCACGugAgUAGaGCUGGGUa -3'
miRNA:   3'- -UCGUGUugUgAUUgUGAUCCAa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 + 92326 0.66 1
Target:  5'- cGCcCAGCACcuuGCugUAGGUg -3'
miRNA:   3'- uCGuGUUGUGau-UGugAUCCAa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 + 109807 0.66 1
Target:  5'- aAGCGCAugGCcGGCAUcugAGGUg -3'
miRNA:   3'- -UCGUGUugUGaUUGUGa--UCCAa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 + 114331 0.66 1
Target:  5'- aGGCACGuacACAgCUGACACggcGGUUg -3'
miRNA:   3'- -UCGUGU---UGU-GAUUGUGau-CCAA- -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 + 115719 0.69 0.999986
Target:  5'- cGCAguACACUGGCACacuGGUa -3'
miRNA:   3'- uCGUguUGUGAUUGUGau-CCAa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 + 120559 0.71 0.999694
Target:  5'- gGGCAUAACACUGAgGCUcccGGUc -3'
miRNA:   3'- -UCGUGUUGUGAUUgUGAu--CCAa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 + 138982 0.7 0.999946
Target:  5'- cAGCGCAcCACUAGuCACcAGGUg -3'
miRNA:   3'- -UCGUGUuGUGAUU-GUGaUCCAa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 - 139018 0.72 0.99898
Target:  5'- aGGCACAGCACUccCACUAGu-- -3'
miRNA:   3'- -UCGUGUUGUGAuuGUGAUCcaa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 + 139124 0.67 1
Target:  5'- uAGCACAuCACguaGGCACcAGGUg -3'
miRNA:   3'- -UCGUGUuGUGa--UUGUGaUCCAa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 - 139140 1 0.141966
Target:  5'- cAGCACAACACUAACACUAGGUUc -3'
miRNA:   3'- -UCGUGUUGUGAUUGUGAUCCAA- -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 - 155308 0.73 0.998074
Target:  5'- aGGCGCAuccUGCUGACGCUGGGc- -3'
miRNA:   3'- -UCGUGUu--GUGAUUGUGAUCCaa -5'
MIMAT0003410 ebv-miR-BART3-5p -42 NC_007605.1 + 162001 0.66 1
Target:  5'- gGGCACAGCAUcAGCACcuuGGa- -3'
miRNA:   3'- -UCGUGUUGUGaUUGUGau-CCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.