miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 - 10964 0.75 0.720204
Target:  5'- -gGCCgGGUGACUGGUGGgggGCa -3'
miRNA:   3'- ugUGGaCCACUGAUCACCa--CGc -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 + 14890 0.66 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 + 17959 0.66 0.993046
Target:  5'- -aACCUGG-GGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 + 21027 0.66 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 + 24096 0.66 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 + 27165 0.66 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 + 30234 0.66 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 + 33303 0.66 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 + 49124 0.7 0.93898
Target:  5'- cCACCUGGUGAgcGGU-GUGCGg -3'
miRNA:   3'- uGUGGACCACUgaUCAcCACGC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 + 65290 0.72 0.873383
Target:  5'- -uGCCUGGUGAaugcgccuCUGGcGGUGCGg -3'
miRNA:   3'- ugUGGACCACU--------GAUCaCCACGC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 + 77592 0.7 0.928093
Target:  5'- -gGCCUGacgcuUGGCUGGUGGUGCc -3'
miRNA:   3'- ugUGGACc----ACUGAUCACCACGc -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 - 85357 0.67 0.984138
Target:  5'- gGCACCucaggUGGUGACaugggAGUGG-GCGc -3'
miRNA:   3'- -UGUGG-----ACCACUGa----UCACCaCGC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 - 85417 0.68 0.971623
Target:  5'- gGCACCUgaggaGGUGGCgugggAGUGG-GCGc -3'
miRNA:   3'- -UGUGGA-----CCACUGa----UCACCaCGC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 - 85477 0.68 0.974564
Target:  5'- aGCACCUgaggaGGUGGCgugggAGUGG-GCGc -3'
miRNA:   3'- -UGUGGA-----CCACUGa----UCACCaCGC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 + 111894 0.66 0.991937
Target:  5'- cACACCUGGUGA--GGUG-UGCc -3'
miRNA:   3'- -UGUGGACCACUgaUCACcACGc -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 - 113009 0.7 0.933677
Target:  5'- cACAUCUGGaccugGACUGG-GGUGUGa -3'
miRNA:   3'- -UGUGGACCa----CUGAUCaCCACGC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 - 137204 0.73 0.821575
Target:  5'- -uGCCUGGUGAgaagUUGGUGGUGgGg -3'
miRNA:   3'- ugUGGACCACU----GAUCACCACgC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 - 139178 1.01 0.025401
Target:  5'- gACACCUGGUGACUAGUGGUGCGc -3'
miRNA:   3'- -UGUGGACCACUGAUCACCACGC- -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 - 139321 0.69 0.953215
Target:  5'- gACACCUGGUGcCUAcGUGauGUGCu -3'
miRNA:   3'- -UGUGGACCACuGAU-CAC--CACGc -5'
MIMAT0003411 ebv-miR-BART3-3p -49.4 NC_007605.1 - 156664 0.69 0.953215
Target:  5'- uGguCCUGGUGGCgggGGUGGUGa- -3'
miRNA:   3'- -UguGGACCACUGa--UCACCACgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.