miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 139282 1.02 0.015826
Target:  5'- cAGCACACCAGCAGCAUCAGGUCc -3'
miRNA:   3'- -UCGUGUGGUCGUCGUAGUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 44969 0.77 0.49533
Target:  5'- uGGCACAuCCAGCAGCGUguuuUGGGUCu -3'
miRNA:   3'- -UCGUGU-GGUCGUCGUA----GUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 77788 0.75 0.604747
Target:  5'- aGGCAcCACCAGCcaAGCGUCAGGcCc -3'
miRNA:   3'- -UCGU-GUGGUCG--UCGUAGUCCaG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 68075 0.73 0.705367
Target:  5'- gGGCACGCCAGCAagGC-UCAGG-Cg -3'
miRNA:   3'- -UCGUGUGGUCGU--CGuAGUCCaG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 77136 0.72 0.779849
Target:  5'- aGGCGCaguccgccaugACCAGCAGCAgcagaaGGGUCa -3'
miRNA:   3'- -UCGUG-----------UGGUCGUCGUag----UCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 76450 0.71 0.837642
Target:  5'- aAGCGCcgGCCGGCAGCAccCcGGUCa -3'
miRNA:   3'- -UCGUG--UGGUCGUCGUa-GuCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 171156 0.71 0.846545
Target:  5'- cGGCGgGCgGGCGGCGggGGGUCg -3'
miRNA:   3'- -UCGUgUGgUCGUCGUagUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 169559 0.71 0.846545
Target:  5'- cGGCGgGCgGGCGGCGggGGGUCg -3'
miRNA:   3'- -UCGUgUGgUCGUCGUagUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 170096 0.71 0.846545
Target:  5'- cGGCGgGCgGGCGGCGggGGGUCg -3'
miRNA:   3'- -UCGUgUGgUCGUCGUagUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 170619 0.71 0.846545
Target:  5'- cGGCGgGCgGGCGGCGggGGGUCg -3'
miRNA:   3'- -UCGUgUGgUCGUCGUagUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 134706 0.7 0.871814
Target:  5'- uGCGCGCCGcCAGCAUggcagcCGGGUCg -3'
miRNA:   3'- uCGUGUGGUcGUCGUA------GUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 4331 0.7 0.87973
Target:  5'- gGGCAguCCAGCAGCu---GGUCa -3'
miRNA:   3'- -UCGUguGGUCGUCGuaguCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 2103 0.69 0.901857
Target:  5'- cAGCGcCACUAGCAGCAgguucucagcaaUCAGGg- -3'
miRNA:   3'- -UCGU-GUGGUCGUCGU------------AGUCCag -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 112481 0.69 0.901857
Target:  5'- -cCAUACCugcgGGCgAGCAUCGGGUCa -3'
miRNA:   3'- ucGUGUGG----UCG-UCGUAGUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 155175 0.69 0.915212
Target:  5'- cAGgAUAUCuGCAGgAUCAGGUCa -3'
miRNA:   3'- -UCgUGUGGuCGUCgUAGUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 48955 0.69 0.915212
Target:  5'- cAGUACACaCGGCcgcuGGCAUggCAGGUCa -3'
miRNA:   3'- -UCGUGUG-GUCG----UCGUA--GUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 55340 0.69 0.921461
Target:  5'- aGGCGCGCUGGCuccAGCGUCAgccGGUUg -3'
miRNA:   3'- -UCGUGUGGUCG---UCGUAGU---CCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 153607 0.69 0.92388
Target:  5'- gAGCACgcGCCGGCAGCGUgucugcacaaacuugCAGGcCg -3'
miRNA:   3'- -UCGUG--UGGUCGUCGUA---------------GUCCaG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 + 123425 0.68 0.927422
Target:  5'- gGGUGCAgcuCCAGCcGCAgCAGGUCa -3'
miRNA:   3'- -UCGUGU---GGUCGuCGUaGUCCAG- -5'
MIMAT0003412 ebv-miR-BART4 -50.3 NC_007605.1 - 3876 0.68 0.93848
Target:  5'- uAGUcCGCCAGCGGCAggucCAGGg- -3'
miRNA:   3'- -UCGuGUGGUCGUCGUa---GUCCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.